| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2000 |
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| Symbol | nrfD |
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| ID | 6988917 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 2141765 |
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| End bp | 2142721 |
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| Gene Length | 957 bp |
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| Protein Length | 318 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 643380297 |
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| Product | cytochrome c-type biogenesis protein NrfD |
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| Protein accession | YP_002263386 |
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| Protein GI | 209695457 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3301] Formate-dependent nitrite reductase, membrane component |
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| TIGRFAM ID | [TIGR03148] cytochrome c nitrite reductase, NrfD subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGTGCAT GGGAAGCTGC GTTTAATTTT GACTCCTTAG TTTGGGATTG GATCATTGCG
ATCTATCTTT TCTTAGCGGG TATGTCTGCT GGTGCGGTGA TGATTTCACT GTATTTGAAG
CGTAACGTCA TTGAAGGAGA TCCTGCGCAT AACGGCATTA TAAAAGCCAT GGCGATTTTA
GCGCCTTTTG GCATTATTGT CGGCTTGCTG ATTTTGGTAT TCCACCTAAC AAAACCGTTA
GCATTTTGGA AAATCATGAT CTACTTTAAC CCAACCTCGG TAATGTCGAT GGGGGTGGTT
TTATTCCAAG TCTACATGGT CGTATTGTTT GCTTGGATTG GGATTGTTTT TCGCAAAGAT
ATCATGGGAT TTTTAAAAGG GAAGTTCACT TTTATTGATG CTATTTTGTT GAAAATAGAG
AAGTTTGAAA ATGCGTTAGA ATTGTTTTTA GGTATTCTTG CAATAATGCT TGCTGCCTAT
ACTGGGTTTT TATTGTCCGC ATTACAAACC TACCCAATGT TGAATAATCC GGTATTGCCG
ATTCTATTCT TGTTCTCTAG TTTATCTTCT GGTGCCGCGG CGTGTTTGCT GTTTGGTATT
TTAGGGTTTA ATGAGCCGAG TAAGAGTCCT TCAGTGTCAT GGATACATAA CTTTGAACGA
CCAGTCGTGT TGTTTGAATT GTTTGTTATT ATCACGTTCT TTACTGGATT GATCTTCAGT
GGAGGCCAAG GTGAAGTAGC GGCTTGGGCA GCAATTGGTG GTGGTTTTTG GGGGATATGG
TTCTGGGTTG GTGTGATTGG CTTAGGAATG ATAGCTCCAT TGGCGCTCAA TGCGTTTGCA
CCTAAAGAAG TCACACATGG TAAAGGGTTT ATCTTTGTTG TGACTTCATT AAGTTTGCTT
GGGGTATTAA TGCTACGTAC TTTTGTTCTC TATGCTGGAC AAATGACCGT CGTATAA
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| Protein sequence | MSAWEAAFNF DSLVWDWIIA IYLFLAGMSA GAVMISLYLK RNVIEGDPAH NGIIKAMAIL
APFGIIVGLL ILVFHLTKPL AFWKIMIYFN PTSVMSMGVV LFQVYMVVLF AWIGIVFRKD
IMGFLKGKFT FIDAILLKIE KFENALELFL GILAIMLAAY TGFLLSALQT YPMLNNPVLP
ILFLFSSLSS GAAACLLFGI LGFNEPSKSP SVSWIHNFER PVVLFELFVI ITFFTGLIFS
GGQGEVAAWA AIGGGFWGIW FWVGVIGLGM IAPLALNAFA PKEVTHGKGF IFVVTSLSLL
GVLMLRTFVL YAGQMTVV
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