| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1824 |
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| Symbol | |
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| ID | 6987403 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 1949687 |
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| End bp | 1951135 |
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| Gene Length | 1449 bp |
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| Protein Length | 482 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 643380126 |
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| Product | membrane associated receptor |
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| Protein accession | YP_002263223 |
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| Protein GI | 209695294 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3614] Predicted periplasmic ligand-binding sensor domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0252626 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCATTTTG TATATAATTC AAATTTAGAA AGCAATCGTC AGCTTTTTAG CAAAGAAGCG
GAACGTGAAT CAACCTTACT TACTTTATTA ATAGAAAAAG ACATCGATTT TATTGGCGCG
GGCGCAAACT TCTATCAGGG GGGCTCCAAA CAAGACTGGC AACAATTTCC CTTATTTGCT
AATTCATTAC TCTCTCGCTC ACAAAGTTTA ATTTCCCTTC AATGGATGCA AAAAGTAGAA
GAAAAGGACA TTGAGAAGCA CAGTAAAGAA GTTAAAAAAA TCTTTCCGTC TTTTTCTATT
TATACCGTAC CTCAAGATAA GCCTAAAACG TACGATTACG TATTTAAAAA TCATGAACCG
ATTTATGTTG CGACAGATAT TTATCCAAGA GATAAGAAAA ATATAGCACT ATTAGGTTTT
TATTCAGCAC AAGAACGCTT TCAACGAGTG GTTGATGAAT CAATTAAAGT GGGTCGCCCA
AGCATTTCGG ATAAAGTTCG TCTTTTACAA GACGGTTTAG ATAAAAGCAC ACCCAAAACG
GGCTTATTGG TCTATCATCC GGTATTTACT GCGGACAAAA AAGCATTGAA AGGCATCATG
GTTGGGGTAC TTAGAGTAAC AAGCTATTTT GATAAGTTGG TCGAATCCAC ATTGCTTGGA
GAATCTTTAG TCGTAAAAAT TATCGATACT GGGTTTGATG CAGAGGATGA CCCTATCATG
TTTGAAAGCC CACAATGGGA TGATTTTAAT GGCTTACGTA TTACTAACTC TATAAATATT
GAAAATAGAA TTTGGCATGT GGAGTACAAA AGTAAGAACG ATTTAAGTGA TAGCCAACAA
CTGAGTTTAT TATGGATGTT TATTGGGGCT CTTATTTTAT CTAACTTGAT TGCCGTCATT
ACTTTTATGG TTACTCGAGA TAAAAAACGT ATTGAGAAAT TACTAGAAGC TCGGACGGAA
GAATTGCATT ACATGGCAAT GCATGATGAT CTTACGGGGT TATTGAATCG TCGTTCAATG
ACAAAAGTAG TGAATCGATT TATAGAAGAA GACAAACCAT TTGCATTGAT CTGCTTTGAT
ATCGATAACT TTAAAGACAT TAATGATACC TATGGGCATC CGGAAGGGGA TGAGGTTTTG
CTTCATATTA CTTATCTTGT TTCTGATCTT TTAGGAGAAG CTACGCCAAT AATACGGTTG
GGTGGCGATG AGTTTGCTGT TCTGCTTGAA ATAGGCGATC TTCAGCAATT ATCGCATGTG
GCGAAGAAAA TTCATCAGGT TATCGAAGAA TCACCAACCA TCATCCCTGA TCTTATTATC
GAACAAACCA TCAGTTTAGG TGCCGTACTC TGGAGAGGTG AACGGAAAGA GGTTTTACTT
AAATTGGCAG ACCAAGCGTT GTACGATAGT AAAGACAGAG GCAGAAACCA AGTAACTATT
CGTGGCTGA
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| Protein sequence | MHFVYNSNLE SNRQLFSKEA ERESTLLTLL IEKDIDFIGA GANFYQGGSK QDWQQFPLFA
NSLLSRSQSL ISLQWMQKVE EKDIEKHSKE VKKIFPSFSI YTVPQDKPKT YDYVFKNHEP
IYVATDIYPR DKKNIALLGF YSAQERFQRV VDESIKVGRP SISDKVRLLQ DGLDKSTPKT
GLLVYHPVFT ADKKALKGIM VGVLRVTSYF DKLVESTLLG ESLVVKIIDT GFDAEDDPIM
FESPQWDDFN GLRITNSINI ENRIWHVEYK SKNDLSDSQQ LSLLWMFIGA LILSNLIAVI
TFMVTRDKKR IEKLLEARTE ELHYMAMHDD LTGLLNRRSM TKVVNRFIEE DKPFALICFD
IDNFKDINDT YGHPEGDEVL LHITYLVSDL LGEATPIIRL GGDEFAVLLE IGDLQQLSHV
AKKIHQVIEE SPTIIPDLII EQTISLGAVL WRGERKEVLL KLADQALYDS KDRGRNQVTI
RG
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