| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1685 |
|---|
| Symbol | |
|---|
| ID | 6988313 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | - |
|---|
| Start bp | 1780153 |
|---|
| End bp | 1781319 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 643380008 |
|---|
| Product | putative amidase |
|---|
| Protein accession | YP_002263108 |
|---|
| Protein GI | 209695179 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.308393 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATGTTC AAACCACTTA TGTGCCTCAC TCAGGACCTG TACAGCAATG GGCTTTTTAT
GGACTTTTAG AAAATAAGAA ATTTGTTGTA AGCGATTGTA TTGATATTAA AGATACGCCA
AATGGCTTAG GTAATCCGGT ATGGTTAGCG CAACAGAAAG TGGCCAAAGA TAACGCGCCA
GTGGTGGATC TTTTATTAAA GAAAGGGGCA ATATTTGTGG GTAAAACTCA AATGGATGAG
TTTGGTTTTG GACTTCATGG TAATAACCCA CATTACGCTG CGATTAAAAA CCCAAACAGT
GAAGGGCGGT TAATTGGTGG GTCATCTTGC GGAGCCATTG CGGCGGTCGC GAATGGATTG
GCTGATATCG GCTTAGGCAC GGATTTAAGT GGTGGAATAC GAGTCCCTGC GGTATACGCT
GGTTTATATG GTTTTAAATC GTCTTCTTAT GCCGCGAATA TGAAAGGGGT TTATTGCATT
GCAAAAGAAG AAACCTCTTT AGGCTGGGTT GCTAAGAGTT TGTCGGACAT TAGAAAAGTC
GCGACGACAT TAACTCCGAT GTCTCCATTA ATGACGGTCG ATCGCATTGT CGTGCTAGAC
AGCTTGTTTC TTGATGTTCC AGAAGAAGCA AAGGTAAAAC TAGAACAATT ACTTGAGGCA
TCCCCTTATT ATAAAGTCGT TCGTAGTAAA GCGATCAGTA AAATAATAAC CATGAAAGCC
GCCGAAAGTT TTAAAGTCAT TACCGCGACA AGAGGGCTAC GTAATATAGA ACCGTGGGTT
GAAAAAAACC ACCCAATGCT CAGTAATGAA ATTAAAATGC AATTGAAATG GTTATCTTCA
TTAAAGTATA AAGATGAGCG AATTGCCCTA GAACAAAGGG ATCTTGTTAA ATCGGTTTTA
GAGTCACTTT TAGATGAAAA AACACTGTTG CTACTGCCAA CGACCGCTAA CATTGCCCCA
CCAGAAACGG CGACGGATGA GCAGTTATAC AAACTTAACT CATTGATATT AAAATACACA
TCATTAGCCA GTTTAGCTGA TTTACCTCAA TTGCATCTTC CGTGGTTTAC TGTGAATAAC
TCACCTTGGG GAGTGTCATT AATCGGTAAA AAAGGAATGG ATAGACAACT AATTGATGCG
GCTATTCGAT GGAAAGGGAA CCAATAA
|
|---|
| Protein sequence | MDVQTTYVPH SGPVQQWAFY GLLENKKFVV SDCIDIKDTP NGLGNPVWLA QQKVAKDNAP
VVDLLLKKGA IFVGKTQMDE FGFGLHGNNP HYAAIKNPNS EGRLIGGSSC GAIAAVANGL
ADIGLGTDLS GGIRVPAVYA GLYGFKSSSY AANMKGVYCI AKEETSLGWV AKSLSDIRKV
ATTLTPMSPL MTVDRIVVLD SLFLDVPEEA KVKLEQLLEA SPYYKVVRSK AISKIITMKA
AESFKVITAT RGLRNIEPWV EKNHPMLSNE IKMQLKWLSS LKYKDERIAL EQRDLVKSVL
ESLLDEKTLL LLPTTANIAP PETATDEQLY KLNSLILKYT SLASLADLPQ LHLPWFTVNN
SPWGVSLIGK KGMDRQLIDA AIRWKGNQ
|
|---|
| |