Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I1403 |
Symbol | |
ID | 6987059 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 1520143 |
End bp | 1522170 |
Gene Length | 2028 bp |
Protein Length | 675 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 643379756 |
Product | signal transduction protein, histidine kinase |
Protein accession | YP_002262856 |
Protein GI | 209694927 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGTTAT CGCCATCACT TTGGAAGCGT CGTATAAAAA CCATGGTGCG CTATCGTCTA TTGTGGCTTA ACTCTGTGCC TTTATTTTTG ACAATGCTTG CTCTTATTAT CATTACGGCA TTTTGGTCAA TTCATTACAC ATGGCAGAAT GCCTTAAATG ATGTAGGCAG TAAACTTTCT GTTGCGAATA ACAGTATTGA ACTTTTGCAG AGAGAACAAA GTGCAGAGTT AGGTGGTTTT GTTGATTCTT ATGCCTTTCA AATTAAATTG AAAAATGGGC AAGATTATAT ACAGCGCTGG TCAAGTAATC AGGCAGCTAA ATATCATGCT GACTTTATTT CATTACATCC TGCCAATTAC GCAAAAAAGT TACCTGAGAC ATTAGAAAGG CAAATGTACC TTGGTCGATC TCGGACGTTT TTCCAAGTGA TGGATGAGAC CGCTTTAGTT GAAATTGATG AAGATCTGCC TAAGCGTGTC AGTATTAGAA ACAAAGATAA CAACATTATT GAAACGAGAG GGCTGATCAG TCGAACACTG ATCCCTATTT TCAATGAGCA TGGCAGCTTA GAGTGGATAG TAGACAGTGG GATTATCCTG AATAACAGCA CATCCTTGGT TGATAGAATT AGAGATCTTA TTTATCCTGA AGGTAAGGGA GCCACAGAGC AAGTTGGTAC GGTGACCTTA TTTTTAGATG ATTTGAGGAT CAGTACGAAT GTGTTTACGG ATGATATATC AGGACAAGAA CGCGCGATTG GTACTGAAGT CTCACCAGAG GTAAAACATC AAGTCATTGA AAATGGTGAA CGTTGGGTCA ATAGAGCATA CGTCTATAAT GATTGGTATA TTTCGGCATA CAAACCCATT ACTGATCTTA ATGGGAATGT TGTTGGGATG TTGTATACCG GGTATCTAGA ATGGCCATTA TTAAAACAAT ACATCTATAA CCTGTTGCAA GCGGGCATCA CGATTCTTAT CACACTCTTA TTATCGACTA TTTTTGTTCA TCGTGGGGCG AGAGATCTTT TCCAACCAAT TGAAAGAATA CACTATGTAG TAAAATCCGT TCAACTTGGA AAGAATGACC GAATAGGCGA TCTTGGTCTT GATAATGGGC ATGAATTGGC CAGTTTGGCG CAGCAATTTG ATAATATGCT CGATCAATTG CAATTACGAA ACAGCCAAAT TCAACGAGCA TCAAAAGAGC TTGAATCAAA GGTTGAATCA AGAACCGCCA GTTTGCATGA AAAAACCATT GAGCTTGAGC AATACATTAA GCTATTAAAG CAAGCTCAAG ATAAATTGAT CATGAGTGAA AAACTGGCCT CATTAGGGGA GTTAACCGCG GGCATTGCCC ATGAGATTAA TAACCCAACG GCTGTGATAT TAGGAAATGC AGAGCTGATC AAGTATGAGC TCGGTGATAA TGCAAGCGTA GTATCGGAAG AGTTAGATGC CATCATGGAA CAAATTGATC GCATTCGTAA TATTACTCGA AGTCTACTTC AATACAGCCG TCAGGGAGGG ATTCAAGATG AGGTTACTTG GCAATACATT AATCCTATTA TTGAAGAAAG CGTCACTCTG GTACGAACTG GTGCACATAA GCGGGATATT GACGTTGAGT TTGATTTCGA ACAACCCCCA AGAGTTGAAG TAAACAGACA TCACTTATTG CAAGTATTAG TCAACTTACA GATGAACGGT ATTCATGCAA TGAAGGCAAA AGGTAAACTC ATTATTCGAA GCAGAACGTG GCAAGAAGAA GAGATAAACT TGGGGGCGAT AATTGAAGTT GAAGATTTTG GTTCTGGTAT GAGCCATGAA CAATTAGGAC GAATTTTCGA TCCTTTTTAT ACGACTAAGC GTGATGGTAC TGGGCTTGGA TTATCTGTTT CTCAAAGTTT ATTAAGCCAA ACGGGAGGGG AGATTAAAGT ACGATCTCAA CTTGGTGAAG GGACTGTATT TACGATTTAT CTACCAACCA AATCAGAACA TTATCCATAT GATAATTTGA TCGGTTAA
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Protein sequence | MMLSPSLWKR RIKTMVRYRL LWLNSVPLFL TMLALIIITA FWSIHYTWQN ALNDVGSKLS VANNSIELLQ REQSAELGGF VDSYAFQIKL KNGQDYIQRW SSNQAAKYHA DFISLHPANY AKKLPETLER QMYLGRSRTF FQVMDETALV EIDEDLPKRV SIRNKDNNII ETRGLISRTL IPIFNEHGSL EWIVDSGIIL NNSTSLVDRI RDLIYPEGKG ATEQVGTVTL FLDDLRISTN VFTDDISGQE RAIGTEVSPE VKHQVIENGE RWVNRAYVYN DWYISAYKPI TDLNGNVVGM LYTGYLEWPL LKQYIYNLLQ AGITILITLL LSTIFVHRGA RDLFQPIERI HYVVKSVQLG KNDRIGDLGL DNGHELASLA QQFDNMLDQL QLRNSQIQRA SKELESKVES RTASLHEKTI ELEQYIKLLK QAQDKLIMSE KLASLGELTA GIAHEINNPT AVILGNAELI KYELGDNASV VSEELDAIME QIDRIRNITR SLLQYSRQGG IQDEVTWQYI NPIIEESVTL VRTGAHKRDI DVEFDFEQPP RVEVNRHHLL QVLVNLQMNG IHAMKAKGKL IIRSRTWQEE EINLGAIIEV EDFGSGMSHE QLGRIFDPFY TTKRDGTGLG LSVSQSLLSQ TGGEIKVRSQ LGEGTVFTIY LPTKSEHYPY DNLIG
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