| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1230 |
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| Symbol | |
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| ID | 6986916 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 1339925 |
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| End bp | 1341223 |
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| Gene Length | 1299 bp |
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| Protein Length | 432 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 643379603 |
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| Product | DctM-like transport protein |
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| Protein accession | YP_002262702 |
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| Protein GI | 209694774 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.44914 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATATTA TGACCGATAA AAATCAACCT GATATAGAGC ATTTACCTCA TGAAAAAACG
GTGACAGTGT TCGGGTACCT TATTCTAGGG ATTGCTGTAG CACTCTCAAT GTTTCAAATT
TGGCAGGGCA TTAGCTCGAC CATTTCTGCG ACGTATTTTC GCCCTATACA TCTTTGTTGG
GTGCTTGTTC TTATTTTTTT GCATTACCCA TTAATTAGTA ATCGAAAAAG CCATTTATAT
CTTGTAGGCC GAGTCGTTGA TCTCGCTTTA TGTGGCCTGA TTGTCTTCGC TGCTTATCGA
ATGTCGATAT TTGATTACAA CGACATCAAC CATCTATTCT ATGGATTACA ACTGTCCGAT
ATGATTGCAG GGTGTTCATT GATTCTCTTA TTAATGGAAG GATGTCGTAG AACGGTTGGT
TGGGTGATGG TGCTTATCGC GGTATTATTC TTATCTTACA GTGCGTTTGG TGACTTATTA
CCGAGTGGCT TTGCGATAAA GTCGTACTCT CTGCAAGAAC TCATTCAATT TCAAATCTTT
TCGGCTAACG GTATTTTTGG TTCAGCCTTA GGCATTGCAG CAACAACGGT TTTTATCTTT
GTTTTATTTG GGGCATTTTT AGAAGTCACA GGAGCAGGAA AATTCTTTAT TGATTTAGCA
TTCTCTATTG CGGGTAAATA TCGTGGTGGC CCAGCTAAAG CAGCCGTATT GGCCTCGGCA
GGGTTAGGAT CTATTTCAGG CTCAGCGATA GCAAACACGG TAACCACCGG CTCAATTACC
ATTCCTATGA TGAAAAAGCT GGGTTATAAA CCAGAACAAG CTGCAGGGAT TGAAGCGGCG
GCCTCAACGG GCGGGCAAAT TATGCCACCA ATCATGGGGG CAGGTGCGTT TGTAATGGCA
CAGTTTACCG GTGTGCCTTA CAGCGAAATC ATGTTGGCTT CTATCGCACC TGCGATTTTG
TATTTCTTCT GTACTTTGTT ATACGTACAT TTAATGGCGT GCAAATTAAA CCTAAAAGCA
GTGAGTCGAA CAGAAGCCGT AATGAGCGTG ATGAAAGATG GCGCGCACCA TTTAATTCCA
TTAGCACTGA TCACAACATT ACTTATGATG GCTTACTCTC CATTATTGGT CGGTGTGGCT
ATTGGCCTTT TTTACCATTC CACTAATTAT GCTGAACCCT TTTGGCGCTG GTTTTCTTGG
TATTGTTATT ATGGTCGGTT TGATTTTAGT TCAGTGGAAA GGCAGAGGGC GATCCAATCA
GAGTTAGTCT TTTATCATTA CATAACTCAT CTTAATTAA
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| Protein sequence | MDIMTDKNQP DIEHLPHEKT VTVFGYLILG IAVALSMFQI WQGISSTISA TYFRPIHLCW
VLVLIFLHYP LISNRKSHLY LVGRVVDLAL CGLIVFAAYR MSIFDYNDIN HLFYGLQLSD
MIAGCSLILL LMEGCRRTVG WVMVLIAVLF LSYSAFGDLL PSGFAIKSYS LQELIQFQIF
SANGIFGSAL GIAATTVFIF VLFGAFLEVT GAGKFFIDLA FSIAGKYRGG PAKAAVLASA
GLGSISGSAI ANTVTTGSIT IPMMKKLGYK PEQAAGIEAA ASTGGQIMPP IMGAGAFVMA
QFTGVPYSEI MLASIAPAIL YFFCTLLYVH LMACKLNLKA VSRTEAVMSV MKDGAHHLIP
LALITTLLMM AYSPLLVGVA IGLFYHSTNY AEPFWRWFSW YCYYGRFDFS SVERQRAIQS
ELVFYHYITH LN
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