Gene VSAL_I1185 details

Gene Information

• Locus tag: VSAL_I1185
• Symbol: vasX-1
• ID: 6986877
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 1293110
• End bp: 1293727
• Gene Length: 618 bp
• Protein Length: 205 aa
• Translation table: 11
• GC content: 33%
• IMG OID: 643379560
• Product: putative type VI secretion protein VasX-1
• Protein accession: YP_002262659
• Protein GI: 209694731
• COG category: [K] Transcription; [L] Replication, recombination and repair; [R] General function prediction only; [T] Signal transduction mechanisms
• COG ID: [COG0515] Serine/threonine protein kinase

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.451902
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTTCAA AAGAGTTCTT TACTTATAAG TCTTTTTTTC ATTGTTTTTT ATTAGACGGT 
GAGAATTGGG ATTTATCTAA GATAGGAAAG CATTATATTA ATTCAAAAGA CATGGAAAGA 
GAGTGGGAAG CTGTGAATGA ATGCGCAGGG CTTTATGTTC AAAAGCCACT AAGTTTGGAT 
GTAATGAATA GTGTTATTTA TTTTGAGTAT GATTCAACAG CAAAACCATT AAGTTCCTTT 
GATAAGAACA ATGCAAAACA GTTTTTATGG ATATTACCTA AGATCATTAG AGCAATAAAA 
CATTGTCATG ATAAAGGTTG GGTACATGGG GATATTAAGC CATCGAATAT CTTGTTTATC 
CCGGCTCTTA CTTCTATTCG ATTAATTGAT TTTGGTGCAA GTTACCGTAT AGGAACTTCT 
CGCAAAACAC TTTCATGCTG GCAAGCAACC CCATCGTTTG CAAGTCCTTC TCAATTACAA 
GGAAAAGGAT TAGTAAAAAA AGAGGATGAT TGGTACGCAT TAACGAAGAT AATTGATCAA 
TTAATAGATA TAGAAATTGA ACCAAGGATT CAAAAAAAAG CGATGTATAT TAGAAATGTA 
CTTATGAATT GGGTGTAA 

 

Protein sequence

MSSKEFFTYK SFFHCFLLDG ENWDLSKIGK HYINSKDMER EWEAVNECAG LYVQKPLSLD 
VMNSVIYFEY DSTAKPLSSF DKNNAKQFLW ILPKIIRAIK HCHDKGWVHG DIKPSNILFI 
PALTSIRLID FGASYRIGTS RKTLSCWQAT PSFASPSQLQ GKGLVKKEDD WYALTKIIDQ 
LIDIEIEPRI QKKAMYIRNV LMNWV