| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0966 |
|---|
| Symbol | |
|---|
| ID | 6988408 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | - |
|---|
| Start bp | 1064843 |
|---|
| End bp | 1066204 |
|---|
| Gene Length | 1362 bp |
|---|
| Protein Length | 453 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 643379356 |
|---|
| Product | putative phage recombinase/integrase |
|---|
| Protein accession | YP_002262459 |
|---|
| Protein GI | 209694531 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTTATC GTAAATTAAG AAATTTTAAA AGTTGGAGTC ATATTGACCC ACTAAGCAAA
AAATTAAAAT TTAATTATTC TAAAGACATA CAATTCTTTA CGTGGAGCAA TCATAATCCT
TGTTATGAAG CAAATATGTT CGTGCATCAA CGAATGCTAG CTAAAATAGC AAATTCAACA
TTAAAACAAG AAGCAGGATT AATTATTCAT CTTATCCACT TTGTTGAACA GCAACCCTCC
CTTACCTCTT TTAATCAACT TACCGACGCT ACTTTCACTC TCTTTGTTCA AAATTTACAA
AACGAAAGAG AACCTACCGG CGAATTAAAA CGCTCCAACA ATCGTGTTAT TGATATTGCA
GAAAAATGTT TGGACTTTCT TAAATTCATT CAAGACCTTA ATGATTTATC TCACTTCATA
GGGAGTGATA AAGCCAATGC TATACGAACA ACCGAAAAAC CTTACAAAAT AAAAATAGAT
GGACATAAGG GATATAAAAT ATGTATTTCA ATTTCTCATA ATAGTATTCC ATCTAAAGAT
GCCATTAGAA CAAGACACCC AATATCTTCA AGTGATTCCT TAAAACTCTG GAACTACCTC
AAGGCACAAC CAGTAGGAAG AGATAAACGA ACTAGAGATA AGGCAATGTA TGTTGTGATG
GAGCAACTTG GTGCGAGGAT CACAGAGTTT CACCTTATAA CAATCTCAGA TTATGAGGAG
GCAAGAAAAA CAGGGTCGAT AAAACTAACT ACATTAAAGC GAAAAGAAGA TAAACACCGC
TTCCTTCCTA TTCCCCAAAT GGTTTTGAAT TACATAGCTC CCTATATAAA AATTCGAAAG
AGAGTCATGA ATAAGAAAAG AACAAAACAT GACATGCTGT TTATTAATTT AAACAATGGA
GAAGCATTTT CACCTAGTTC TTGGGGCGCT TACCTAAACC AGTGGAAAAG GGAAATAGGT
ATAGAGGGAA ATTTACATGC TCACCTTTAT AGACATGCGT TTATTACTGA TAAGTTGAAA
GAAATCATCC TTGCCCACAA TGAAATAAAT GGAAAGGATG GTTTTCGTAA ACATTTATTG
CACACGAAAG CATTCAAACA AGAGTTGCAG CAATGGACTG GGCACACTCT ATTGAGCTCA
TTGGATACCT ACATTGATTT AGTTTTTGAA GATATCAACG GGTATACTGA GACCTATAAT
GCTGTTTCAT TAAAAAACAG TGTTACACTT ATAAAACGTC AACTTACTGA TTTAAAAGAC
ATCTATAAGA AAAAAGAACT AACCCTAGGT GAATATAACT TACGTCTGAA TGAAATGTTA
AATAGCTTTG AGCAAGATAT CGACAATAGT ATAAACACAT AA
|
|---|
| Protein sequence | MPYRKLRNFK SWSHIDPLSK KLKFNYSKDI QFFTWSNHNP CYEANMFVHQ RMLAKIANST
LKQEAGLIIH LIHFVEQQPS LTSFNQLTDA TFTLFVQNLQ NEREPTGELK RSNNRVIDIA
EKCLDFLKFI QDLNDLSHFI GSDKANAIRT TEKPYKIKID GHKGYKICIS ISHNSIPSKD
AIRTRHPISS SDSLKLWNYL KAQPVGRDKR TRDKAMYVVM EQLGARITEF HLITISDYEE
ARKTGSIKLT TLKRKEDKHR FLPIPQMVLN YIAPYIKIRK RVMNKKRTKH DMLFINLNNG
EAFSPSSWGA YLNQWKREIG IEGNLHAHLY RHAFITDKLK EIILAHNEIN GKDGFRKHLL
HTKAFKQELQ QWTGHTLLSS LDTYIDLVFE DINGYTETYN AVSLKNSVTL IKRQLTDLKD
IYKKKELTLG EYNLRLNEML NSFEQDIDNS INT
|
|---|
| |