| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0875 |
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| Symbol | |
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| ID | 6986699 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 976947 |
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| End bp | 978521 |
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| Gene Length | 1575 bp |
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| Protein Length | 524 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 643379276 |
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| Product | glycine betaine transporter OpuD |
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| Protein accession | YP_002262379 |
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| Protein GI | 209694451 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0576373 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTGATG TAACCGATAA CATGAAAAGT TCAAGCAAGA ATTCGTCAAT AAAAGAGAAT
GAATCCACGG CAGAAAAACT GGGGCTCGAT AACCCCGCTT TATGGTATAG CGGTGGTTTT
ATCGCTTTAT TTGTCTCACT TGCGTTAGTG AATGCTGAAT TACTGTCGAC CATTGTTAAT
AGTGGATTTG CATGGGCTGT GAGTGTCTTT GGTCCTTATT GGCAAATCTT ATTATTACTG
ACATTCCTAA TTGGTTTAGG GTTGGCAGCA GGACGTACTG GTCGAGTTAT TTTGGGGGGA
ATAGATAAAC CTGAAATGGA CGGATTCCGC TGGATGGCGA TCATCTTTTG TACTTTATTA
GCGGGTGGAG GCGTATTTTG GGCCGCGGCT GAGCCGATAG CTCATTTTGT TAGTGCACCA
CCATTATATG GCGCGCAAGA GAACGTACAG CAAGCGGCGG TTAATGCGTT ATCACAATCT
TTCATGCATT GGGGATTCTT AGCATGGGCA ATCGTGGGGA GCTTAACGTC CATTGTTGTT
ATGCATCTTC ATTATGACAA AGGGTTACCG CTTAAACCGA GAATTTTACT TTATCCTCTC
TTTGGTAAAC GCGTACTGAC TGGCCACACA GGTGCATTGA TTGATGCGTG TTGTATTGTC
GCGGTTGCGG CAGGGACAAT TGGTCCGATT GGTTTCTTAG GTCTACAGGT GAGCTATGCG
TTAAACGCTC TGTTTGATAT ACCAGATGGT TTTACCACAC AGCTCATCAT CATATTATTC
GCTATCGCTC TATACACAAT TTCTGCGTTA AGTGGTTTGA ATCGTGGTAT GCAAATGCTT
AGCCGTTATA ACGTTATTTT AGCGTCAGCA TTGATGATTT ATGTGCTTGT TTTTGGTCCA
ACTAACTTTA TCGTCAATGG CTACATCCAA GGGGTGGGCA GCATGATTGA TAATTTCATT
CCGATGGCAA CCTATCGTGG TGATGAAGGC TGGTTAAGTT GGTGGACGGT ATTTTTCTGG
GGATGGTTCT TAGGGTACGG ACCAATGATG GCGATTTTTA TTGCTCGCAT ATCACGCGGC
CGCAGTATTC GCCAATTGAT CTCTACCATT AGTATTATTG CACCGCTTGT GACGTGCTTT
TGGTTCACGA TAGTCGGTGG TTCAGGATTG GCTTTTGAAA TTGCGAATCC AGGCAGTGTG
AGCTCGGCTT TTGAAGGGTT TAACTTACCG GGGGCTTTAT TGGCCGTGAC CTCTCAATTG
CCAATGCCAA TGGTAACGTC AATCCTATTT CTAATTTTAA CCACCATCTT TATTGTGACC
ACGGGTGACT CGATGACATA CACCATCAGT GTGGTTATCA GTGGAGAAAC AGAGCCAAAT
GCCATTATCA GAACCTTTTG GGGCGTGATG ATGGGGGTAA CGGCATTAAT CCTTATCTCT
CTTGGATCTG GTGGTATATC AGCATTGCAA TCCTTCATTG TCATTACCGC TGTTCCTGTC
TCTTTAATCT TGTTGCCCTC ACTTTGGGAT GCACCACGGA TCGCCATGAG GATGGCAAAA
GAACAAGGGT TGTAA
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| Protein sequence | MSDVTDNMKS SSKNSSIKEN ESTAEKLGLD NPALWYSGGF IALFVSLALV NAELLSTIVN
SGFAWAVSVF GPYWQILLLL TFLIGLGLAA GRTGRVILGG IDKPEMDGFR WMAIIFCTLL
AGGGVFWAAA EPIAHFVSAP PLYGAQENVQ QAAVNALSQS FMHWGFLAWA IVGSLTSIVV
MHLHYDKGLP LKPRILLYPL FGKRVLTGHT GALIDACCIV AVAAGTIGPI GFLGLQVSYA
LNALFDIPDG FTTQLIIILF AIALYTISAL SGLNRGMQML SRYNVILASA LMIYVLVFGP
TNFIVNGYIQ GVGSMIDNFI PMATYRGDEG WLSWWTVFFW GWFLGYGPMM AIFIARISRG
RSIRQLISTI SIIAPLVTCF WFTIVGGSGL AFEIANPGSV SSAFEGFNLP GALLAVTSQL
PMPMVTSILF LILTTIFIVT TGDSMTYTIS VVISGETEPN AIIRTFWGVM MGVTALILIS
LGSGGISALQ SFIVITAVPV SLILLPSLWD APRIAMRMAK EQGL
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