Gene VSAL_I0671 details

Gene Information

• Locus tag: VSAL_I0671
• ID: 6986594
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 749726
• End bp: 750157
• Gene Length: 432 bp
• Protein Length: 143 aa
• Translation table: 11
• GC content: 34%
• IMG OID: 643379071
• Product: hypothetical protein
• Protein accession: YP_002262189
• Protein GI: 209694261
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG4968] Tfp pilus assembly protein PilE
• TIGRFAM ID: [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.228298
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTCTAA TAAATAAATG TAACTTATCT CGTGTTCATA TAAGGGGTAT GACACTGATC 
GAAATTATGA TCGTAATTGC TATTATTGGT TTATTGTCAG CGATTGCTTA TCCTGCGTAT 
ACAAACCATA TATTAAAGGC GAACCGTATC GTTGCCTTAG CTGATATGGC GAAAATTCAA 
TTAGAATTAG AAACGAAATA TATAACTAAT TATTCAGATA TAGCTAGCTC TATCGTTAGC 
GGGGGAACTT GTTCTTTTTG TGAAACACAA TCGGATAAAT ATACTCTGAG CTTAGAGGGG 
TTAACTGCTA CAACTTATAC GATTAAAGCT ACTCCTATAA AGGCACAGAT AAAGGATACA 
TGCTCAGGGA AAACTTATAC TGCGATTACT TTAAATCAAT TTAATAAAAG TGAGCCTAAG 
GAATGCTGGT AA 

 

Protein sequence

MILINKCNLS RVHIRGMTLI EIMIVIAIIG LLSAIAYPAY TNHILKANRI VALADMAKIQ 
LELETKYITN YSDIASSIVS GGTCSFCETQ SDKYTLSLEG LTATTYTIKA TPIKAQIKDT 
CSGKTYTAIT LNQFNKSEPK ECW