| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0355 |
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| Symbol | |
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| ID | 6989363 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 388495 |
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| End bp | 391074 |
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| Gene Length | 2580 bp |
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| Protein Length | 859 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 643378734 |
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| Product | integral membrane transport protein |
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| Protein accession | YP_002261887 |
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| Protein GI | 209693959 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.15446 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGCAGT CGTCTAATAC GTCACAAGAT GTGCAAGAAA TGGTGGCCCA ATCAGATACT
GGTGCTCGTT CACCTGAAGG ATTATCTGGC CGAATTTTAT GGTTTGTTCC ACTATGTTGG
TCTTTATTCC AACTTTGGTA TGCCTCCCCT TTACCGTTTA TTTTCAATTT CGGCATACTG
AATGATACTG AAGCTCGATC AGTGCATTTA GCCTTCGCCA TCTTTTTAGC TTTTACTGCT
TACCCTGCAC TTAAAAACTC ACCAAGAGAT CGTATTCCCG TTATCGATTG GATACTTGCT
TTTGCTGGTA GTTTTTCTGC CGCTTATATC TATATTTTTT ATACTCAGCT CGCAGAACGC
TCAGGGGCGC CAACAACACC AGATATCATC GCCTCAGTTG TTGGTATGGT CTTATTATTA
GAAGCAACTC GACGCGCTTT AGGCCCTCCA TTAATGGTCG TGGCTGCCGT CTTCTTGCTT
TACACTTTTG CTGGCCCACA CATGCCTGAT GTTATCGCGC ATAAAGGAGC CAGTTTAAAT
AAAGCCATGT CACATTTATG GCTAACCACT GAGGGAGTCT TTGGTGTTGC CTTAGGTGTC
TCAACCTCTT TTGTTTTTTT ATTTGTACTC TTTGGTGCCA TGCTAGAAAA AGCCGGAGCG
GGTGCTTACT TCATTAAAGT CGCCTTTTCT CTGCTAGGTC ATATGAAAGG AGGCCCAGCA
AAAGCCGCCG TTGTGGCTTC AGGTTTATCA GGCCTAGTTT CTGGCTCATC GATTGCAAAC
GTCGTAACAA CAGGTACTTT TACCATTCCA TTAATGAAAC GAGTCGGTTT CTCTGGTGAA
AAAGCCGGTG CCGTCGAAGT TGCCGCCTCT ACCAATGGGC AGTTAACGCC ACCAATCATG
GGTGCAGCCG CCTTTTTAAT GGTTGAATAT GTTGGTATTT CTTATGTTGA GGTTATCAAA
GCCGCTTTAT TGCCTGCTTT AATTTCTTAT ATTGCTCTTC TTTATATTGT TCATCTTGAA
GCCTGTAAAG CAGGTATGAA AGGCTTACCT CGCCGCCATA CACCAACCTT AGTTCATAGC
CTATTATCCT TTACTGGTAC GATTCTTGGC CTTTGTGTGC TTAGTGCTGC TGTTTATTAT
GGTATCGGTT GGACTAAAGA TGTCTTTGGT GACGCCGCAA CCCCTATTGT TACCGTCGCA
CTGCTACTTT CTTATGTCGG ATTAACTAGC ATCTCCGCTA AATACCAAGA ACATGCGATG
ATGGCGATTG ACGAAGAACT AACTGAAGTA CCCGATCCAG GACCAACCAT CAAGTCCGGT
CTTCATTTCT TATTACCGAT TGTCGTTCTC GTTTGGTGTT TAACGGTTGA ACGCTTCTCG
CCGGGTTTGT CTGCTTTCTG GGCATCCGTG TTTATGATAT TCATTCTCCT GACTCAACGC
CCATTAATTG GTTTCTTTAC TAAAGAAGGC ACACTTGTTA ATCAAGTAAA ACAAGGGGTT
GATGATCTGC TCGAAAGCTT AGTGTCTGGT GCCAGAAACA TGATTGGTAT CGGCGTTGCA
ACGGCGGCGG CAGGTATTGT TGTTGGTGTG GTTACCTTAA CGGGCATTGG TCTTGTTATG
ACGGATTTTG TTGAATTTAT CTCGGGTGGC AGCATTATTC TTATGTTGTT ATTTACCGCG
GTAATCAGCT TAATTTTAGG CATGGGGCTA CCAACGACAG CAAACTACAT TGTCGTATCA
ACCTTAATGG CACCCGTTAT CGTAACGCTA GGAGCCGCTC ACGGATTAAT TATTCCATTA
ATAGCAGTGC ATTTATTTGT GTTCTATTTT GGTATTTTAG CCGATGACAC GCCCCCCGTG
GGTCTCGCCG CTTTTGCCGC TGCTGCCATA GCAAAATCGG ATCCAATCCG TACTGGTATC
CAAGGGTTCA CTTACGATAT TCGTACCGCT ATATTGCCTT TCATGTTTGT CTTTAATACC
CAATTACTAT TAATGGGCAT TGATTCTTGG TGGCATTTAG CATTAACCAT TATTTCCTCC
ATCATCGCAA TGTTAACTTT TTCCGCTGCG ACACAAGGTT GGTGGTTTAC GAAAACAAAA
TGGTGGGAAG TTGTTTTACT ATTACTCATA ACTTTCTCAC TATTCCGTCC TGGTTTTTGG
TGGGATCAAA TCTATCCAGC CAAAGATTAT TACCAAGGTA TTGAGATCGC TCAACTTGCA
GAAGAGTTAA ATGTGGGACA ATCACTCACC TTAGAAGTCT CTGGAGAAAA TCTAGAAGGT
AATATCGTAA GTAAAACGGT ACGTTTACCT TTTGACGATC GAGCGGTAAC TGGTGAAGAA
CGCGTAAGCT CTATGGGGCT AATGCTGTCT AAAGTCGATA ATAAAATGAT CGTCGACATG
GTCGAATTCG GCAGTCCAGC GGAAGCTTCA GGAATAGATT TTGATTGGGA AATAACGAAT
GTGGTTCTTG ATGCAGAGCG TCCACTAAAA GAATGGGTAT TTATTCCAAC TCTTCTTCTA
CTGTTTGCAC TGGGCTTTAA TCAGCGTCGC CGAGCGAAAA AGGAAAACTT GGCCGCATAA
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| Protein sequence | MTQSSNTSQD VQEMVAQSDT GARSPEGLSG RILWFVPLCW SLFQLWYASP LPFIFNFGIL
NDTEARSVHL AFAIFLAFTA YPALKNSPRD RIPVIDWILA FAGSFSAAYI YIFYTQLAER
SGAPTTPDII ASVVGMVLLL EATRRALGPP LMVVAAVFLL YTFAGPHMPD VIAHKGASLN
KAMSHLWLTT EGVFGVALGV STSFVFLFVL FGAMLEKAGA GAYFIKVAFS LLGHMKGGPA
KAAVVASGLS GLVSGSSIAN VVTTGTFTIP LMKRVGFSGE KAGAVEVAAS TNGQLTPPIM
GAAAFLMVEY VGISYVEVIK AALLPALISY IALLYIVHLE ACKAGMKGLP RRHTPTLVHS
LLSFTGTILG LCVLSAAVYY GIGWTKDVFG DAATPIVTVA LLLSYVGLTS ISAKYQEHAM
MAIDEELTEV PDPGPTIKSG LHFLLPIVVL VWCLTVERFS PGLSAFWASV FMIFILLTQR
PLIGFFTKEG TLVNQVKQGV DDLLESLVSG ARNMIGIGVA TAAAGIVVGV VTLTGIGLVM
TDFVEFISGG SIILMLLFTA VISLILGMGL PTTANYIVVS TLMAPVIVTL GAAHGLIIPL
IAVHLFVFYF GILADDTPPV GLAAFAAAAI AKSDPIRTGI QGFTYDIRTA ILPFMFVFNT
QLLLMGIDSW WHLALTIISS IIAMLTFSAA TQGWWFTKTK WWEVVLLLLI TFSLFRPGFW
WDQIYPAKDY YQGIEIAQLA EELNVGQSLT LEVSGENLEG NIVSKTVRLP FDDRAVTGEE
RVSSMGLMLS KVDNKMIVDM VEFGSPAEAS GIDFDWEITN VVLDAERPLK EWVFIPTLLL
LFALGFNQRR RAKKENLAA
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