| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0199 |
|---|
| Symbol | bioH |
|---|
| ID | 6986370 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | - |
|---|
| Start bp | 239701 |
|---|
| End bp | 240486 |
|---|
| Gene Length | 786 bp |
|---|
| Protein Length | 261 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 643378584 |
|---|
| Product | carboxylesterase BioH |
|---|
| Protein accession | YP_002261742 |
|---|
| Protein GI | 209693814 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
|---|
| TIGRFAM ID | [TIGR01738] putative pimeloyl-BioC--CoA transferase BioH |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.701098 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAACGT CGCTTTATTG GCAAACGGAA GGTGAAGGTT CCGATCTGGT TCTCATTCAT
GGATGGGGAA TGAACGGGGC GGTGTGGCAG CCTATTGTTG AGAAGCTAAG TTCACAGTAC
CGAGTTCATA CCGTAGACTT ATCAGGTTAC GGATACAGTG CCGAGCTTGG CAGTGCTGAT
TTTGATGAGA TGGTGGCGCA AGTACTCGCT CAGGCACCAG AAAAATCGGC GTGGCTTGGA
TGGTCTCTTG GTGGGTTAAT TGCAACGCAA GCCGCATTAA CGGCTCCAGA TCGTGTGAGT
CAATTAATTA CCGTAGCAAG TTCGCCTCGC TTTGCTGCTG AGAAAGGGTG GCGAGGAATA
AAGTCTGCCG TGTTGTCCCA ATTTACTGAG CAGTTAAAAG AGGACTTCAC CTTAACCGTT
GAGCGCTTTA TGACGTTGCA AGCAATGGGT AGCCCAAACG CCAAGCAAGA CATTAAACAA
GTAAAACGCG CCGTGCTTTC AAGACCAGCA CCAAATCCGA GTGCTTTAGC TACAGGTTTA
ACGATTTTGG CCGATATAGA CTTACGAGAG AGTCTATCTC AATTAACAAT GCCAGTATGC
CGAATGTATG GTCGTTTGGA TGGATTAGTG CCGATAAAAG TCGCGCATGA TATGGATGCG
TTTATCCCTC ATTCAACCAA AGTAGTCTTT GAACAAGCCT CGCATGCTCC TTTTATTTCG
CACAGTGATG AATTTATCAC TGAGTTACAT CGTTTTTTGC AGCCGGAAGA TGAGTTTTTA
ATTTAA
|
|---|
| Protein sequence | MTTSLYWQTE GEGSDLVLIH GWGMNGAVWQ PIVEKLSSQY RVHTVDLSGY GYSAELGSAD
FDEMVAQVLA QAPEKSAWLG WSLGGLIATQ AALTAPDRVS QLITVASSPR FAAEKGWRGI
KSAVLSQFTE QLKEDFTLTV ERFMTLQAMG SPNAKQDIKQ VKRAVLSRPA PNPSALATGL
TILADIDLRE SLSQLTMPVC RMYGRLDGLV PIKVAHDMDA FIPHSTKVVF EQASHAPFIS
HSDEFITELH RFLQPEDEFL I
|
|---|
| |