Gene VSAL_p840_21 details

Gene Information

• Locus tag: VSAL_p840_21
• Symbol: traI
• ID: 6961492
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011311
• Strand: +
• Start bp: 20545
• End bp: 26355
• Gene Length: 5811 bp
• Protein Length: 1936 aa
• Translation table: 11
• GC content: 45%
• Product: protein TraI (DNA helicase I)
• Protein accession: YP_002261511
• Protein GI: 215778371

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATATCCA TTTCCCCAAT CGCGAGCGCT GGCGAAGCCA CTAAATATTA CCTAGACGAT 
GAGAAGCACC TCAATGGCGA GCAATCCGAA CTCACGACAG AAAAAGAAAA CAGCGAGTCT 
GATAAGGAAA AGAATTACTA CTTAAAAGAC AGCAACAACA CCGCGTGGTT TGGAAAGTTA 
GCCACCGAAA AAGGCCTGGA TGGAAAACCC ATCGAAGGGG ATACCTTACA AGCGGTACTT 
TCAGGCTCGT TACTCGATGA AACCATTCAT GGAAAACGTG ACAAACACCG AGCAGGGTTT 
GATTTGACCT TTTCGGCGCC AAAATCCGTC AGCGTTCTGG CCTTGGTCGG TGGGGACACT 
CGACTGCTTG ATGGCCACAA CAACGCCGTT AAATTCGCTT TATCTGAGCT TGAAAAAGAC 
GCCGCTCAAG TCAAATACAC CGAAGAGGAC ACAAAAAAAC AATCCTACGC CAACAGCAAA 
AGCATGTTGT TTGGTTTGGT TCAGCACAAA ACCAGTCGAG AAGACGATCC ACAACTTCAC 
ACTCACGCCC TGACCGCCAA CATGACTCGT GACGAACAAG GTCGATTACG CGCCTTGGCC 
ACCAGTTTAA AACAATCTGG TGGGGTTATT AATGGCACAA TGGAGCGCGT ATACAATAAT 
CAACTCTACT ATGGCATGCT CTACCAAAGT CATTTATCCA AACAAGCAGA AAGCCTGGGC 
TACACAATCA AAGGAGCTGG CAATGGTCAG TTTGAGATTG AGGGGGTGCC TCAATCACTC 
ATGGATGACT TTTCAAAGCG AAGCCAACAA ATCAATGAGA AAACCCAAGA CTTAGGGTTT 
AATTCTCAAC AAACCCGAGA CTTAGCGGCC AAAAACACCC GAAAAGCCAA AACACACAAA 
GACGCCGTTG AGCTCAACAG CACCTGGCAA CATACCGTAA AAACCGACGG GTTTGATATA 
ACCGCCTTCA TTAACAACGC AAAAGAAAAT CCGGTTAAAG CGCCCAATGA AAACGTTATC 
AAACCACGCG CCGTGGATGC GCTGACTCGT ACCATCAATC ATTTATCAAA AACACAAACC 
CAATTGAGTT ATGAAAAAAT GGTGTCTTTT GCCATGAGTG AATTCACCAA AGGAGAAAAG 
CTCGATGCAC TGGACATCAA GCTTGCGCTT GATGAGAGGA TCGCTTCAAA AGAGCTGATT 
GGATTAGACA AAAACAACAG TCAATTCACA ACCACAGCCT TATTGAATAA CGAGAAAAAA 
CTCATTAATT CCACCAAGGG GCGCCCTCGC CACATGCGCA CCCAACCCAA CGACACTGCA 
CTATCTCAAC TCAATTTAAA CAAAGAAAAC CAGAACAAAC TCGCGGAATT ATTTCTTTCA 
ACCAAACAGT TCAATACTGT CAATGTGTTT GGTTCGAGTG AGCAAGTAGC AAAAGGGCTG 
CTGCATGTCG GCTCTGAAAG CGGCAAGCGC ATTCACATCA TGACGCAGGG TGGCATCTCT 
CAAGAAAAAA CAGAGCGCAC CATAAAGCGC CAATCCCACA CTCCACTCCA ATGGATAAAA 
AACACGTTCA GAGCGGATTT TGTTCATGGG GTAAATCAAT ACTTAGGTGA CAAAGTAACG 
CCCTTTAGCA ACAAAGACGT TTTTGTCTTT GAAGACAGCG GTAAATTCAG TGGCGACCAA 
CTCATCGACA TCACCAACAA AGCAAAACAC ACCAACAGTA AGATAATCTT CCTCAACCAT 
GCCTCCGCAC GACAAGGCAT GAAATCTCAC TCTTCAATGG ACCTTTTAAG CAAAGGAAAC 
ACCAACAACA TCAACTGGGT AAACAATCAA CCCACCAAAG CGAAAATAAA GATCCACGAC 
AACAACCTCA ATGAGTTAGT CAATCAATAT GCAGAAAAAC CAGACAAAAA CACGATCCAA 
GTGCTGGCAA CAACCAATGC TGACGTGAAA ACACTCAACA CCGCCATCAG AGAAAGACTC 
AAACAAACGG GCGAAGTGTC ACGCCAAGGC GTGAGCATTT CGACGTTAAA CCCCCACTTT 
CTAAGCCAAG AGCAACGTAC CCTGTCCACC CATTACAAAC CAGGCATGGT ACTTCGCTCA 
TGGAGCGAAG GCGCGATGAG TCAATACATC GTCAGTAAAC CCCACAGAAA AACCAACACG 
CTGGACATCA TCGATGAAAA AGGCAATCAA CTCACCATCG ACCCATCAAA GCCAGCGCAT 
AATTTTTCTG TCTTTAAAAA AGAAAGCCTA GAGATTGCCA GCGGCGATAA AATCATCACA 
AGCGGAAAAC ATTACGCCTC TCAACTCGCC GCCCATCAAG CGTTCATTGT AAAAAAAGCC 
ACACCTCAGT CCATCACCTT AGAAGACAGA GAGGGCCAAC AAAAAACCAT TAAGACAAAA 
CACCTGACGG ACGCGCCCAT CACGCACAAC TTTGCCAGTA CCACTCAAAA AATAAGTGAC 
ACGGCAACGC ACCTCATGGT GCAGACCAAA GCGTATAGCG CCTCTAAAGA ATTACTCAAT 
GAGTTGAGCC TCAATCGAAA CAACATCGAT ATTTTCACTG ACGACAAAGA GAAAGTCGCG 
GCGCAGTTTG AAAAAAACGA AGTCAGACCC GCCGCCATTG AGCGAGTCAT GGCCACAACA 
CAGCCGACAG AAAAATACCT ATCGACACTG ACAACCAACA CCGTGACCAA AGACGTTGAA 
CAGGCATTGC GCCTGTTAAA CACCCCAACC TCAAACAACA TTGAAAAAGC AGTTAACTTT 
GCCATTCATC ACATCAGTGA AAAAGAAGCC GGTTACACCC AAAAAGAGCT CGTCATGCAA 
GCGATACGCT ACAGTCTAGA AGAGACCGGC ACCGCCATCA GCAAAGAGGA CATCATTGAT 
ACCTTAAAAA ACAATCAAGA AACCCTCTCT AGTGAATTCA GTGATGGCAC CCGCTGGACA 
ACCAAAGACG CCATCCATAC CGAGAAGACC ATTCTCGATA CCTTAGCGCG AGGGAAAAAC 
CAAACCACGC CCTTTGTCAC TCACGCTCAA GCCACCGAAT TTCTTCAACA TGAAAGCCGA 
CTCACTCAAG GACAAAAAGA AAGCGTCCAC ATGATAGCGA CAACCCCCGA TAGATTCGTG 
GCGGTACAAG GACTGGCGGG AACCGGTAAA TCAACCATGC TTGAGAAAGA CATCGAACTC 
ATTCACAGCA TCGACAAACT CTCAAACAAA GAAACGACCA TCCTTGGTCT GGCGCCCACT 
CACGCCGCCG TAAACGAGCT CAAAAACAAA GGCGTTGAAG CGCAAACGCT TCAATCCTTA 
CTCGCCGACA TCCAGAGTGG CAAAACCACA GCAAACACAT ACCAACAAAC GCTTTTTCTT 
CTCGATGAAA GCTCCATGAT TGGCAACAAT GACATGAAAC ACTTCACCGC CTTAGTTGAG 
AAAAGTGACG CGAAAGCGGT GCTTCTTGGG GACAAAGCGC AATTGCAATC ACTCAGCGCA 
GGCAAACCTT TTGAGCTTGC CATGAGCAGC AACGCCCTTA ATCGCACCGA CATGACGGAC 
ATCGTAAGAC AACAAAACGA CACCCTCCTT GGCGCGGTGC ACAACATGGT AGACAAACAG 
CCAGAAAGCA GCCTAAGCAA GCTCAAGCAG CAACCCAACG CCGACACGGG CATCCACAAA 
ACTCATCATG TCGTCTCAAC CTACGAGAAA ATCACCCCCA ACCACAGAGA AAACCAAGAA 
ATAGCCACAG AGAAACTGGC TCACGTCGTC GCACAAGATT ACCTTTCAAG AACCGAACAA 
TCGCAAGAAG ACACGCTCAT CATTGCTTAT ACCAACAAGG AGCGGGACAC CATCACTGAA 
CACATCAGAC ATGGCCTCCA ACAAAGTAAT CAACTTCATA AAGAAAACAC ACTCATGCCA 
CGACTGCGCA GCATTGGCGC CACCAAAGAA GAAATGGCCA CTATGTTGCC TTACAAAAAA 
GGACTCGTTG TAAAAACAGG CAAAGACACC CTATCCACCA TCATTCACGT GGATAACAAA 
CACAACCTAG TGACAGTAAA AGAGCAGAGC ACAGGAAAAG AACGCCCGTT CTTTCCTAAA 
AATAGCGATC ATAAAATGAC AAACCTGTTC ACTCGCAGTG ACCAACCCCT CTCAACCAAC 
GATAAAGTCA TGATGAGAAT GACCGACAAA GACAAAGGCA TTGAAGCCAA TACGCCGTAT 
ACCGTCAGTA ACATTGAGAA CAATCTCATT ACCCTTAGCA ACAAAAAACA GCACACCATC 
ACCCTATCAA CCACGGATTT AAAAGACGCC CACTGGGATT ATTCGTACAC CAGAACCGCA 
AACATGGCGC AAGGCGCCAC GTACAAAAAC GTCATCACCG CCATCAAAGG CCGTGGGCAA 
CTGACCAACA TTCGTCGTGC TTATATCGAT TTAACTCGCG CATCCGAGCA CGTAAAACTC 
TACACCGACA ACGAAGGCAC CATGATAAAA CAATGGCTCA ACAACCAGGA CGACAAACGC 
TCTGCCATTG AGACCAATAC ACTCTCAACC CCAAAAGAAA GCATCACCTT TAACACCGCG 
CCACTGCCAA AAGAAAACCC ACATTACCAA GACATCAATG GCAATTTGGA CATGAAAATC 
ATGGCCAAAA AACTCAATAG CGAGCTCGCC ATGCGAGCCG AATCACTCGC AATTCACCTA 
CTTGGTACCC CAAACAAAAG CAAATCAGAC CGTGATTACC TCACTTTTGG CATCGGTAAA 
TCCGCGTTAA AAGTCACGCT CACAGGCAAG CATCGTGGCC ACTTTAAAGA CTGGACAACC 
GGCGAAAAAG GCAATGGCAT AAACCTCATT ATGGCGGTTG AAAACATCGG TTTTAAAGAC 
GCGTTACTGC ACGCCGATAC GCTGCTTAAT CAAACCAAAG ACAACCCGTT AACCCTCAAT 
CCAAACCATG AAAAACTGAC CAATACCACG CCTAAATTCA TCAGCGAGCT CGAAGCCCGC 
GCGCGCCAAT ACCAACAAGA AGCAACCCCA ATCAAAGGCA CGATTGCTCA AGAATACCTG 
CGCAATAAAG GCATTATTAT TGACGACCAC CCAAGCATTA AATTTCACCC AAAGGTATAT 
TCATCAGAAA CACGAAGTAA TTACCCTGCG ATTATCTCAA CCATCGAAAA TAACAAAGGC 
CAAAGTAACG CCATTGAAAT AACGTATTTA GATAACAAAG GACATACCGC CGACTTAAAT 
ATAGAAAAAC GCGTACTCGG CACTAAAACA AAATCAAACG TCGTTATTAA CGAAGGCTCA 
AACACCAACA TCAGCATTAT TACCACGACC ATTGAAGACG CCCTATTAAT TAATCAACAC 
AACAATAAAG ACATCGACAT TAATACCGTT AATAATAAAA ACGACATTCA AATAATGGAT 
AAAAACACAT TACGAGACAA CATCATCATT GTATTAAACA CCAAAGGAGA AACCCTAAAC 
GAAAATAACA TCACAAAGAT AATGGACAAC TTTACCAACC ATACCGTCAC CTTTATTGAT 
AACGCAGAAT TACAGAAACA AATCGATACT GAAATAACAA AAATTGAACA CGGTCAGTTA 
GAAATAAAAA ATGAAGTAGG CAACAATCTT GATATGCACA AACAAGAGAA TGCCATTAAA 
CAAGAAGATG AACACCTATT GTCATCTCAA TCCAAGTTCA TTAAAGAGCA AGAAAGAAAA 
GAAGAGAACG AACTCATGAG CAAAGTCAGC AACATCAATA TGGATGAAAA GAGCACACCA 
GACATCGATA CCAACCCCCA AAGACTCATG GAATTGGACA GAGAAAGATA A 

 

Protein sequence

MISISPIASA GEATKYYLDD EKHLNGEQSE LTTEKENSES DKEKNYYLKD SNNTAWFGKL 
ATEKGLDGKP IEGDTLQAVL SGSLLDETIH GKRDKHRAGF DLTFSAPKSV SVLALVGGDT 
RLLDGHNNAV KFALSELEKD AAQVKYTEED TKKQSYANSK SMLFGLVQHK TSREDDPQLH 
THALTANMTR DEQGRLRALA TSLKQSGGVI NGTMERVYNN QLYYGMLYQS HLSKQAESLG 
YTIKGAGNGQ FEIEGVPQSL MDDFSKRSQQ INEKTQDLGF NSQQTRDLAA KNTRKAKTHK 
DAVELNSTWQ HTVKTDGFDI TAFINNAKEN PVKAPNENVI KPRAVDALTR TINHLSKTQT 
QLSYEKMVSF AMSEFTKGEK LDALDIKLAL DERIASKELI GLDKNNSQFT TTALLNNEKK 
LINSTKGRPR HMRTQPNDTA LSQLNLNKEN QNKLAELFLS TKQFNTVNVF GSSEQVAKGL 
LHVGSESGKR IHIMTQGGIS QEKTERTIKR QSHTPLQWIK NTFRADFVHG VNQYLGDKVT 
PFSNKDVFVF EDSGKFSGDQ LIDITNKAKH TNSKIIFLNH ASARQGMKSH SSMDLLSKGN 
TNNINWVNNQ PTKAKIKIHD NNLNELVNQY AEKPDKNTIQ VLATTNADVK TLNTAIRERL 
KQTGEVSRQG VSISTLNPHF LSQEQRTLST HYKPGMVLRS WSEGAMSQYI VSKPHRKTNT 
LDIIDEKGNQ LTIDPSKPAH NFSVFKKESL EIASGDKIIT SGKHYASQLA AHQAFIVKKA 
TPQSITLEDR EGQQKTIKTK HLTDAPITHN FASTTQKISD TATHLMVQTK AYSASKELLN 
ELSLNRNNID IFTDDKEKVA AQFEKNEVRP AAIERVMATT QPTEKYLSTL TTNTVTKDVE 
QALRLLNTPT SNNIEKAVNF AIHHISEKEA GYTQKELVMQ AIRYSLEETG TAISKEDIID 
TLKNNQETLS SEFSDGTRWT TKDAIHTEKT ILDTLARGKN QTTPFVTHAQ ATEFLQHESR 
LTQGQKESVH MIATTPDRFV AVQGLAGTGK STMLEKDIEL IHSIDKLSNK ETTILGLAPT 
HAAVNELKNK GVEAQTLQSL LADIQSGKTT ANTYQQTLFL LDESSMIGNN DMKHFTALVE 
KSDAKAVLLG DKAQLQSLSA GKPFELAMSS NALNRTDMTD IVRQQNDTLL GAVHNMVDKQ 
PESSLSKLKQ QPNADTGIHK THHVVSTYEK ITPNHRENQE IATEKLAHVV AQDYLSRTEQ 
SQEDTLIIAY TNKERDTITE HIRHGLQQSN QLHKENTLMP RLRSIGATKE EMATMLPYKK 
GLVVKTGKDT LSTIIHVDNK HNLVTVKEQS TGKERPFFPK NSDHKMTNLF TRSDQPLSTN 
DKVMMRMTDK DKGIEANTPY TVSNIENNLI TLSNKKQHTI TLSTTDLKDA HWDYSYTRTA 
NMAQGATYKN VITAIKGRGQ LTNIRRAYID LTRASEHVKL YTDNEGTMIK QWLNNQDDKR 
SAIETNTLST PKESITFNTA PLPKENPHYQ DINGNLDMKI MAKKLNSELA MRAESLAIHL 
LGTPNKSKSD RDYLTFGIGK SALKVTLTGK HRGHFKDWTT GEKGNGINLI MAVENIGFKD 
ALLHADTLLN QTKDNPLTLN PNHEKLTNTT PKFISELEAR ARQYQQEATP IKGTIAQEYL 
RNKGIIIDDH PSIKFHPKVY SSETRSNYPA IISTIENNKG QSNAIEITYL DNKGHTADLN 
IEKRVLGTKT KSNVVINEGS NTNISIITTT IEDALLINQH NNKDIDINTV NNKNDIQIMD 
KNTLRDNIII VLNTKGETLN ENNITKIMDN FTNHTVTFID NAELQKQIDT EITKIEHGQL 
EIKNEVGNNL DMHKQENAIK QEDEHLLSSQ SKFIKEQERK EENELMSKVS NINMDEKSTP 
DIDTNPQRLM ELDRER