| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_p840_20 |
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| Symbol | traD |
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| ID | 6961438 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011311 |
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| Strand | + |
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| Start bp | 18326 |
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| End bp | 20404 |
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| Gene Length | 2079 bp |
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| Protein Length | 692 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | |
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| Product | conjugative transfer protein TraD |
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| Protein accession | YP_002261510 |
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| Protein GI | 215778370 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATACAG ACAAACGCCC CAAACACAGC AATTACACCC GTGGCGGTCA AATTACCTTC
CACAACTTGC GCATGTTTTT TCAAATAAAC ACCGCCCTGT TTAAGTGGAT AAGCGTCAGT
GTGCTTGGCG CCACGGTGCT GCTCACTTAC GTTCGTGCGC CCGCCAATAC GTTCATGGCT
GTCTGGTATT CAATCCGCAA TCACACGCTA CTCAAACTCA ATGCCCCATT AACTCGTGAA
GTCACGACCT TATGGGAGGG TAAACGTTAC ACCAGCACAT TAGGCGCTCA ACTCAGTAAC
AACACCTTAC TCGATTTAAA CGCTCAGTTT TGGTATCAAC TCCAAGTCAA TTTCTTGATA
AGCACCTTAC TTGGACTCGG CCTTGTCTTT ATTGCCATGA CGTATTTTAA AAGTAAAGGG
GACGAACAAA CCGACGATCA CTTTATCCGT GGGATAAAAA AGGCAACTCC TGCAGAGATA
ACTAAAGAAG TTAAAGCCAA GAGCAAGCTA TCAAGTTTTG CCATCGATAA GCACCGTCTG
TTTAAGCACA ATTTTGAAAT ACAGCACTTA ATGATTGACG GCACCACGGG CGCGGGAAAA
TCCGTCGCAC TCAGAAAGTT GGTCCGTTGG ATACGTAAAC GTGGCGATAA GGCCATCATT
TACGACAAAG GCTGCACCTT TGTCGGTAAG TTCTATAACC CTGAAACCGA CACCATTTTA
AATCCCTTTG ATGAGCGCTG CGCCAACTGG GACATTTGGT GTGACGCCAA AGAAGCCCCT
GACTTTGAAA ACATGGCCGC GGCCCTTATT CCTCAACATG GCGATGGCGA TCCATTTTGG
GTTGATTCGG CGCGAACCAT CTTCTCAAGC ACCGCCTTTC AAATGATGAA AGACAATGAA
CCGGTCAGCA CCGCTCGATT ACTGAGCCTG GTCTTAACCT CTGAGCTAGA AACATTAGGC
TCTTTTTTAA AAGGCACGGA ATCGGCCACC CTCGTGTCTA ACAAGATTGA AAAAACCGCC
ATTTCCATCA AATCCGTATT GGCCACGTAC ATTAAAGCCT TGCGATTCTT AGAAGGGTTG
GATGAGAAAA ATGAACACAA CGCCTTAAAG CGCCCTAAAT TCTCCATCAC CGATTGGGTG
CAAGACGATG AGCAAAAAGG CTTCTTGTTT CTCTCCAGTA ATGCACAACA ACACGCGTCA
TTACGTCCCT TAATCTCAAT GTGGTTGGCC ATTGCCTCCA ACGCCATCTT AGGCATGGAA
GAAGACGAAG ACCGCCGTAT CTGGGTGATA CTCGATGAGA TGCCAACCTT GCATAAATTG
CCAGAGTTGG ACGCCATCAT CGCCGAAGTC AGAAAGTTTG GCGGCTGTTA TGTCATTGGC
ATTCAGTCTT ACGCTCAATT GGTCAAAACC TACGGTAAAA CCACGGCTGA GGTCATTTTT
GATTTACTCA ACACCCGTTT TTACTTTCGA GCCCCATCAG CCACGATGGC AAAAATATCG
GCGCTAGATT TGGGCGAGCA AGAGATAGAC ATCTCCAAAG AAAACTACTC TTATGGCGCT
CACGCCATGC GTGATGGCGT CTCTCTTGGC CACCAAACGG TGACAAGACC CGTGGTATCA
ACCGCTGAAA TCCAAACTCT GGACGACTTA CAGTGTTGGG TTCGATTACT GGGGTGCAAC
CTCATCACAC GATTAGATTT AGTGTTCGAT AAGATGCCAC AACTTTGTCA CCCCTTCATC
AAACGCAACC ACAGCATGTC ACCTGAGATG ACCGCTATTT ATGAACAACT GACCTTTCTT
GAGCTCATGG CACCGCAAGC GTTAGATAAA GAAAACCGTG ATGCATTACG AAGTGGCCAA
GCGAAAAACT TTGAAGACGA AACACAAATG AACGCGGAAT GGGCAGATCA AAAACAGGCC
ATCCGAGCCA ATAAAGCCAA AGAGTTAATT CAAAAAGAAA AAGGATCGAT GCTAACTCCA
GAGAAAAAAG AGCAAGAAAG AAGAGACATT GAGCAAGAGC AAGAGGCTGA GCGCATGATA
AATGAAGCCT CCATTGCCGA TATAGAGCTC GGAGATTAA
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| Protein sequence | MDTDKRPKHS NYTRGGQITF HNLRMFFQIN TALFKWISVS VLGATVLLTY VRAPANTFMA
VWYSIRNHTL LKLNAPLTRE VTTLWEGKRY TSTLGAQLSN NTLLDLNAQF WYQLQVNFLI
STLLGLGLVF IAMTYFKSKG DEQTDDHFIR GIKKATPAEI TKEVKAKSKL SSFAIDKHRL
FKHNFEIQHL MIDGTTGAGK SVALRKLVRW IRKRGDKAII YDKGCTFVGK FYNPETDTIL
NPFDERCANW DIWCDAKEAP DFENMAAALI PQHGDGDPFW VDSARTIFSS TAFQMMKDNE
PVSTARLLSL VLTSELETLG SFLKGTESAT LVSNKIEKTA ISIKSVLATY IKALRFLEGL
DEKNEHNALK RPKFSITDWV QDDEQKGFLF LSSNAQQHAS LRPLISMWLA IASNAILGME
EDEDRRIWVI LDEMPTLHKL PELDAIIAEV RKFGGCYVIG IQSYAQLVKT YGKTTAEVIF
DLLNTRFYFR APSATMAKIS ALDLGEQEID ISKENYSYGA HAMRDGVSLG HQTVTRPVVS
TAEIQTLDDL QCWVRLLGCN LITRLDLVFD KMPQLCHPFI KRNHSMSPEM TAIYEQLTFL
ELMAPQALDK ENRDALRSGQ AKNFEDETQM NAEWADQKQA IRANKAKELI QKEKGSMLTP
EKKEQERRDI EQEQEAERMI NEASIADIEL GD
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