Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lferr_2243 |
Symbol | thrS |
ID | 6878235 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
Kingdom | Bacteria |
Replicon accession | NC_011206 |
Strand | - |
Start bp | 2215137 |
End bp | 2217071 |
Gene Length | 1935 bp |
Protein Length | 644 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 642790102 |
Product | threonyl-tRNA synthetase |
Protein accession | YP_002220653 |
Protein GI | 198284332 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0441] Threonyl-tRNA synthetase |
TIGRFAM ID | [TIGR00418] threonyl-tRNA synthetase |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00594301 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.00373508 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCCAGATA TCCAGTTGCC GGACGGTAGT CATCGTCAGT TTGCGGAGCC CGTGACCGGG CTGACGCTGG CGCGAGCGAT CGGCAGCGGC CTCGCTAGGG CGGCGGTAGC CATGCGGGTC GACGGCATCC TCAAGGATCT TTCGGCGGTG CTGGATCAGG ATGCGGAAGT GGCGATTGTC ACCCGCGACA GCGCAGATGG TCTGGAGGTG ATCCGCCATT CCACCGCGCA TTTGCTGGCG CAGGCGGTGC AGTCCCTCTA TCCGGAGGCT CAGGTCACCA TCGGGCCGGT CATCGATAAC GGTTTCTACT ATGACTTTGC TTTTCCGCGT GGCTTCACGC CAGAAGATCT GGAAGCGATC GAAGCGCGGA TGCACGCACT GGTCAAAGAA AATCTTCCGG TGCAACGCGA GATGCTCTCC CGCGAAGATG CCATCGCTCT GTTTGAAAAG ATGGGCGAAG ACTACAAGGT CGAAATTATC CGCGCCATTC CCCGAGGTGA ACCACTGAGC CTGTATCGGC AGGGGGATTT CGTGGACCTG TGCCGCGGTC CCCATGTGCC ATCGACTGGC GTTCTCGGGG CATTCAAATT GCAGCGAGTG GCGGGCGCCT ATTGGCGCGG GGATTCCCGC AATCCCATGT TGCAGCGTAT TTATGGCACG GCCTGGGCGC AGCAGAAAGA CCTTGACGCC TATCTCCAGC AACTGGCGGA GGCCGAAAAG CGGGATCACC GGCGTATCGG CACTGAACTG GAGCTCTTCT CCATTCAGGA AGATGCCGGT GGCGGCCTGG TGTTCTGGCA TCCCATGGGC TCGCGCGTGC GACGCGTCAT CGAGGATTTT TGGAAGGAGG CCCACGTGGA GGCAGGTTAC GATCTGCTCT ATACGCCGCA TATTGCCCAT GAGCAGCTGT GGTATACCTC GGGGCACAAG GATTTCTACA GTGAGTCCAT GTTCGACCCG ATGCAGGACG AGGGGCAGGC CTACCAGCTC AAACCCATGA ACTGTCCATT CCATATTCTC ATTTATAAGG ACAAGCTGCA TTCCTACCGG GACCTGCCGA TTCGCTGGGC GGAACTGGGT ACGGTTTACC GCCACGAAAT GTCGGGTGCC CTGCACGGAC TGATGCGGGT GCGGGGCTTT ACCCAGGATG ATGCCCACGT CTTTTGTCGA CCCGACCAGA TAGAGGCAGA AATCGGTGCG GTGCTGGTAC TGGTGCGAAA AATTCTCGGC ACCTTCGGCT TCGACCAGTA TGAAATCAAT CTGTCCACCC GTCCCGGGCA TTCGGTGGGC AGTGACGAGA TCTGGGATGC CGCCACCCAG GCCCTGCGCA ATGCCCTGGA GCGTGCGGGC CTGGAATATC AGGTGGATGC AGGTGGTGGC GCGTTCTACG GACCTAAAAT CGATCTGAAG ATTCAGGACG CCATCGGTCG TAAGTGGCAA TGCAGCACCG TGCAGCTCGA CTTCAATCTG CCGGAGCGCT TCGCCATGGA ATATGTGGCG GAAGACGGTG CGCGCAAGGT GCCCATCATG GTGCATCGCG CCATCTTCGG TTCCATCGAA CGCTTCTTCG GTGTACTCAT CGAGCACTAT GAGGGCAAGT TTCCAGTCTG GCTCGCTCCG GTACAGGCCG TGGTGCTGCC TATCAGCGAG CATTACTCGG AATACGCCGA GTCGGTAAGT GACGTATTGG TGAAACGCGG CATTCGGGCA GAAACGGACT TGAGAAACGA GAAGATAGGT TATAAGATAC GCGCCCATAC TTTGCGTAGG GTGCCCTACC TGCTGGTGGT CGGGGAACGG GAAAAAGAAG CGGGTACGGT GGCGGTGCGG GATCGAAATG GCCAGGATCT CGGCACGCTT TCCATAGACG CCGTGGGCGC TACCCTGCAG AAAATGGACC AGGCGCGGGT GAATACCCTG GAGTGGCAAG GCTAG
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Protein sequence | MPDIQLPDGS HRQFAEPVTG LTLARAIGSG LARAAVAMRV DGILKDLSAV LDQDAEVAIV TRDSADGLEV IRHSTAHLLA QAVQSLYPEA QVTIGPVIDN GFYYDFAFPR GFTPEDLEAI EARMHALVKE NLPVQREMLS REDAIALFEK MGEDYKVEII RAIPRGEPLS LYRQGDFVDL CRGPHVPSTG VLGAFKLQRV AGAYWRGDSR NPMLQRIYGT AWAQQKDLDA YLQQLAEAEK RDHRRIGTEL ELFSIQEDAG GGLVFWHPMG SRVRRVIEDF WKEAHVEAGY DLLYTPHIAH EQLWYTSGHK DFYSESMFDP MQDEGQAYQL KPMNCPFHIL IYKDKLHSYR DLPIRWAELG TVYRHEMSGA LHGLMRVRGF TQDDAHVFCR PDQIEAEIGA VLVLVRKILG TFGFDQYEIN LSTRPGHSVG SDEIWDAATQ ALRNALERAG LEYQVDAGGG AFYGPKIDLK IQDAIGRKWQ CSTVQLDFNL PERFAMEYVA EDGARKVPIM VHRAIFGSIE RFFGVLIEHY EGKFPVWLAP VQAVVLPISE HYSEYAESVS DVLVKRGIRA ETDLRNEKIG YKIRAHTLRR VPYLLVVGER EKEAGTVAVR DRNGQDLGTL SIDAVGATLQ KMDQARVNTL EWQG
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