| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_1760 |
|---|
| Symbol | |
|---|
| ID | 6877742 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | + |
|---|
| Start bp | 1737577 |
|---|
| End bp | 1738674 |
|---|
| Gene Length | 1098 bp |
|---|
| Protein Length | 365 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642789628 |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_002220188 |
|---|
| Protein GI | 198283867 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCGTT CCCTGCCCGT AAAATCCCTG TTGCTTCCCG TTGCGGCAGC CCTGATCCTG
GCGGGCTGCG CCCAGCATAA GCCGCCCCAC AAAAACACGG CGCTGCCCGT GGAAACTGCG
ACGGTGCAGA CCGGCAACCT GCCCATTGTG GTCAACACCC TGGGGCAAGC AGTGGCGTCC
CATAGTGTCA CCATCACCCC ACAGGTAAGC GGCATTTTGC AAAAGGTTGC CGTCCACTCG
GGGCAAGTGA TTCAAAAAGG CCAGCTTCTA TTCCAGATTG ACCCTGCCAC ACCGGGTGCT
CAGGTGGCTG AAGATCGAGC CAATCTGCAG GGTGAAATCG CTCAGCAACA ATATGATGAC
GCGCAGGTCA AGGCTTATGC GCCTTTGCTC AGCAAGGATT ATGTCACCCG TCAGACGGTC
CAGCAGGCAC AGGCACAGGC CAACACGGCG GCCGCCACCG TGGCCGCTGA TCAGGCGGCG
CTGCAGGCCG CCCGGATTAC CCTGGCTGAA ACCCGGATTA CCGCCCCCAT CAGTGGTAGT
GTGGGAATCC TGAGTCTCAA ATCCGGTAAC CTGGTCACCG CCAACAGCAC GCAACTGGTA
ACCATCAATC AGATTCAACC CATCTACGTG CAATTCAGTC TGCCTGAAAC CTATCTCAAC
GATTTACATA CCGCCATTAG CGATTACTCC GGCAAGGTGG ACGTCTGGGA TGAGAACCAT
CAGACCCGGA TCGGCACCGG GACGGTCACG GTGATTGATA ATACCGTCAA CACGGCTTCA
GCGACGGTTA CGGCACGCGC CACTCTCAGT AATCAACCAG CCCGGCTCTG GCCCGGTGAA
TATGTGCAGG TGGATTTCAC CGCTCAAGAG CTCCACCATG CCCTGATCAT TCCCGCAACT
GCCTTACAGC AGGGTGTCTC CGGCTCTTTT GTCTATACCA TAAAAAAAGA CAAGGCTGTC
ATGCAGGCCG TGCAATTTTT GGGGCAGAAC GGTAAGCAGG TTGCCATAGC CGGAAGCCAT
TTATTGGGAG ACAGCGTGAT TGTGGGGGCG CCGACCCGGC TTCATCCCGG TTCTGAAGTG
CGCGTGATCA AGCCATGA
|
|---|
| Protein sequence | MMRSLPVKSL LLPVAAALIL AGCAQHKPPH KNTALPVETA TVQTGNLPIV VNTLGQAVAS
HSVTITPQVS GILQKVAVHS GQVIQKGQLL FQIDPATPGA QVAEDRANLQ GEIAQQQYDD
AQVKAYAPLL SKDYVTRQTV QQAQAQANTA AATVAADQAA LQAARITLAE TRITAPISGS
VGILSLKSGN LVTANSTQLV TINQIQPIYV QFSLPETYLN DLHTAISDYS GKVDVWDENH
QTRIGTGTVT VIDNTVNTAS ATVTARATLS NQPARLWPGE YVQVDFTAQE LHHALIIPAT
ALQQGVSGSF VYTIKKDKAV MQAVQFLGQN GKQVAIAGSH LLGDSVIVGA PTRLHPGSEV
RVIKP
|
|---|
| |