Gene Lferr_1588 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_1588 
Symbol 
ID6877564 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand+ 
Start bp1549822 
End bp1550466 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content63% 
IMG OID642789452 
ProductdTMP kinase 
Protein accessionYP_002220017 
Protein GI198283696 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0125] Thymidylate kinase 
TIGRFAM ID[TIGR00041] thymidylate kinase 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.0735324 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAGGCGA CCACACGAAA GAGCGGATTT TTCCTTACCC TGGAGGGTAT TGAGGGTGCG 
GGGAAAAGTT CAGCCCTGCC GGTGCTGGCG GAACTTTGCC ATCAGCAGGG TTATGCCGTT 
GAAGTTACCC GGGAACCGGG CGGAGGGCCA CTTGGGGAGG CGTTGCGCAC CATTTTTCTG 
GACGATAGCC TGCACCTGGA TGCGGATGAG GAACTGCTTC TGCTCTATGC CGGACGCCGG 
AACCACTGGC GGACACGTAT CGCGCCTGCG CTGGCCGCCG GGAAGGTGGT CATCAGTGAC 
CGCTATGAAG ACTCCACTTA CGCTTATCAG AGCGGCGGAA GGGGAGTCCC TCCCGCGCAC 
ATTGCGGCGC TGGCACGCTG GGCGGGAATC ACCCGCCGTC CAGACCTGAC GTTTTGGTTC 
GATATAGCGC CGGAGTTGGG TGCAGCACGT ATCCGCATGC GCCGCCCGGA TCGGCTGGAA 
CAGGAAGACC AGGCCTTTTT CCGCCGCGCT AGGGCGGTCT TTGCGGAGCG TTGCGCGGCC 
GAACCACAAA GAATCTGGCG CGTCGATGCG AGCCTGCCCC TGGCGATGGT GCATGACGCT 
GTGCGGGCAA GGCTCGCCGC CGGCCTGGCA GCCTTTTATT CATGA
 
Protein sequence
MKATTRKSGF FLTLEGIEGA GKSSALPVLA ELCHQQGYAV EVTREPGGGP LGEALRTIFL 
DDSLHLDADE ELLLLYAGRR NHWRTRIAPA LAAGKVVISD RYEDSTYAYQ SGGRGVPPAH 
IAALARWAGI TRRPDLTFWF DIAPELGAAR IRMRRPDRLE QEDQAFFRRA RAVFAERCAA 
EPQRIWRVDA SLPLAMVHDA VRARLAAGLA AFYS