| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_1343 |
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| Symbol | |
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| ID | 6877317 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011206 |
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| Strand | + |
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| Start bp | 1295239 |
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| End bp | 1297008 |
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| Gene Length | 1770 bp |
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| Protein Length | 589 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642789217 |
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| Product | P-type conjugative transfer protein TrbL |
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| Protein accession | YP_002219784 |
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| Protein GI | 198283463 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3846] Type IV secretory pathway, TrbL components |
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| TIGRFAM ID | [TIGR02783] P-type conjugative transfer protein TrbL |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.794081 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTGGAC ACCGCAGGTT TCCGTGGATC ATGGGCATGC TTCTGGGTGC CGTCCCCGGC
ATTTCGTTCG CAGCGGGTTC GGGGTCGTTG AGTCAGGTAC AAAGCCTTTT GCGAGGCAAA
ATTCTTCCCT GGCAAAGTGT CATGCAAACG GCGGCCACGG ATCTGTTCTA CGTCCTGGCG
GCGGTCGAGT TCTCCGTCCT GTTTCTGAAC CATGTTCTGC AAAAGCGCGG GCATGAGGAT
CTCTTTGCCG GTATCATCAA GAAGGTGGTG ACGCTGGGGT TTTTTCTGAC CCTGCTCGAC
AACTCCGGGA CCTGGATTCC CGACATCATC AATGGTCTGG CCGGTGGAGC GCACGCGCTC
GGAGTGACGG CCGTGACACC CGGGCAGATC GCGACGGAGG CTCTTCAGGC ATTTCTCGGG
ATCGTGCTGT CTCCAATAGC TGCCGCCACC CACAACCTGG GCAATACCTT CAGCGACATT
TTCAGTGGTA ACTTCTCCGC GGCTTTTTCT TCTGCGGGCA AAGCGGTCGC CAGCAGCAAT
CCGGCATCGC TCCTGGTAGA GACCCTCCTG GCGGGGATCA TTGGCCTGCT GGCAGGCGTG
GGCATTCTGG TCATGGCCCT GGAGTTCCTG ATGGTCCAGA TCGAGAGTTA CCTGGTGATT
GCCCTGGGCG TGATCATGCT GGCCGGCGGC GGGCTGCGCT GGACGGCAAA GTATGTCGGC
AGTTATTTCG ATTACGCCAT CAACGTGGGT GTCCGTCTTT TTATCCTGAC CGCGCTGGCG
TATCTGGTGA CCTACAGCAT CGTGCCGCTG ATCCAGACGA TCCTGGAGAA TGTCACGAAT
CCTTTGCAGG CTGGATTCGA GGTGCTTATT CTGGGTGCCC TCATCGCCCT GTTGCCCCGC
AAGGCCTCCA GCATTGCCAG TAGCCTCCTG TCCGGTAACT CATCCTTCTC CGGCGGAGAA
CTGGCCAAGG AAGGCGGGAT GATCGCTGGT GGTACGGTAG CACTGGGAGC GGCTGGCGTG
GGCCTGGCCG CCGCTGCGGG CGGGGGGCTT GCCGCTGGTG GACTCTCCGC GGCGGCGGGT
GCTGGAGGCG GTGCTGCCGG AGGGGCTGGC AGTCTTGCAG GCGGCCTTAC CGGGGCGGCG
GGCGCGGGAG AAACCGGCGC GGCGGCTGGT GTGGCGGCAC CGGAAGCTGG GGCGATGTCC
GCAAGCGGTG GCGCGAGTTC CGGCGCGGGC GCAGGGAACG CCGTACTGGC CCCCGGCATG
GGTGGTTCGG CGGGTAGTGA GGCTCCACAG GCAGCCAGGG CTGTGCAGGC TCCAGCGCCC
ATTACGCAAT CCACTGGCCA GCAAAACCCA TCCAAGGGTG TCGAGGCGCC GAGCCAGGAA
ACTGTAAAGG AAGCGGGCCA GGATAAGCGG AACGATCAGG AAATGAGTGC AAGCGAACCC
TTCGCAGGGG GCGAACCCCA GCCCGACGCG CCGCCCGTCC CGGTCAATGC GGTTCCGGCG
CCAGAACCCG TCAGCGCGCC TTCCGGCGGT GGCGGTCAGG GAAGCACGGC GGCTCCGGCT
CCGGGTGCGG CCGTGAGTGG CGGTGCCACG ATGGACGATG TGGTCGAGCA GCTGAAACAG
ATGCAGGGGC AGCCCAAGGG AGTGGCGGAT AGGATCAAAA AAGGTTTTGC CGGTAGATTT
CTAAAACATG TGGAGGAAAT AACTACGGCA AAATCAAATC AAGTCCAGAA GAACGCCATA
GATTCCAGTC ACCCAAGAGA TTTTGATTGA
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| Protein sequence | MRGHRRFPWI MGMLLGAVPG ISFAAGSGSL SQVQSLLRGK ILPWQSVMQT AATDLFYVLA
AVEFSVLFLN HVLQKRGHED LFAGIIKKVV TLGFFLTLLD NSGTWIPDII NGLAGGAHAL
GVTAVTPGQI ATEALQAFLG IVLSPIAAAT HNLGNTFSDI FSGNFSAAFS SAGKAVASSN
PASLLVETLL AGIIGLLAGV GILVMALEFL MVQIESYLVI ALGVIMLAGG GLRWTAKYVG
SYFDYAINVG VRLFILTALA YLVTYSIVPL IQTILENVTN PLQAGFEVLI LGALIALLPR
KASSIASSLL SGNSSFSGGE LAKEGGMIAG GTVALGAAGV GLAAAAGGGL AAGGLSAAAG
AGGGAAGGAG SLAGGLTGAA GAGETGAAAG VAAPEAGAMS ASGGASSGAG AGNAVLAPGM
GGSAGSEAPQ AARAVQAPAP ITQSTGQQNP SKGVEAPSQE TVKEAGQDKR NDQEMSASEP
FAGGEPQPDA PPVPVNAVPA PEPVSAPSGG GGQGSTAAPA PGAAVSGGAT MDDVVEQLKQ
MQGQPKGVAD RIKKGFAGRF LKHVEEITTA KSNQVQKNAI DSSHPRDFD
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