Gene Lferr_1107 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_1107 
Symbol 
ID6877078 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp1082491 
End bp1083249 
Gene Length759 bp 
Protein Length252 aa 
Translation table11 
GC content59% 
IMG OID642788987 
Productbeta-lactamase domain protein 
Protein accessionYP_002219556 
Protein GI198283235 
COG category[R] General function prediction only 
COG ID[COG1235] Metal-dependent hydrolases of the beta-lactamase superfamily I 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGGTGG TTTTCCTCGG TACGGGATCC AGTGCCGGAA CCCCGGTGAT TGCCTGCCAC 
TGCCCGGTTT GTTGTAGCGA CGACCCGCGC AATCACCGCC TGCGGGCCAG TATCCTGGTG
CGGGATGAAG GCGTTGATCT GCTGGTGGAT ACCGGTCCTG ACCTGCGTCA GCAGATGCTG
CGTGCCGGCG TGCAGTCGCT GACGGCCGTG CTCTATACCC ATTTTCACGC CGATCATATC
AATGGGGTTG ACGATCTGCG CGCCTTCAAT TTTGCACAGG AGGTCGTGAT CCCCTGCTAT
GCGGATGAGC GCACGGCAGC GGAGCTGGAG AGCCGTTTCC GCTATTGTTT TCTGCCGCCG
GATCCGGCCT GGGCGAAACC TTCCCTGTCC ATGCACCGGA TCGTATCGCC GCAGACCTTT
GGCGGGGTTC GGGTGACGCC CATACCCGTG CTGCACGGTG ATCTACCCAT ACTCGGGTAC
CGTTTCAATG ATGTGGCGTA TCTGACGGAT CTGAAAACGA TTCCAGACGC CAGCCTAGAG
CTGCTGCGGG GTTTGAAAGT GTTGGTCCTG GATTGTCTGC GTTATGAATA TCACCCCACC
CATCTGCATG TCGAAGAGGC CCGGTACTGG GCGCGCCGGA TTGGCGCGGA ACGGACCATT
CTTACTCACA TGACCCATGA CGTGGATTAC GCGACATTGG CGGCGGAGTT GCCGGAGGGC
GTCATTCCCG CCAGTGATGG TATGGTCCTG GACCTTTAG
 
Protein sequence
MKVVFLGTGS SAGTPVIACH CPVCCSDDPR NHRLRASILV RDEGVDLLVD TGPDLRQQML 
RAGVQSLTAV LYTHFHADHI NGVDDLRAFN FAQEVVIPCY ADERTAAELE SRFRYCFLPP
DPAWAKPSLS MHRIVSPQTF GGVRVTPIPV LHGDLPILGY RFNDVAYLTD LKTIPDASLE
LLRGLKVLVL DCLRYEYHPT HLHVEEARYW ARRIGAERTI LTHMTHDVDY ATLAAELPEG
VIPASDGMVL DL