| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A4479 |
|---|
| Symbol | |
|---|
| ID | 6871978 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | + |
|---|
| Start bp | 4316368 |
|---|
| End bp | 4317132 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 642787394 |
|---|
| Product | epimerase |
|---|
| Protein accession | YP_002218005 |
|---|
| Protein GI | 198244873 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0036] Pentose-5-phosphate-3-epimerase |
|---|
| TIGRFAM ID | [TIGR01163] ribulose-phosphate 3-epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.882429 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 95 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAGCC AGTTTGCCGG ATTAACGCGC GAAGCATGTG TGGCATTGTT AGCGTCATAT
CCGCTTAGTG TGGGTATTCT GGCAGGGCAG TGGATTGCGT TGCATCGCTA TCTGCAACAG
TTGGAAGCGT TAAACCAGCC GCTGTTGCAT TTGGATTTGA TGGATGGTCA ATTTTGCCCG
CAGTTTACCG TTGGGCCATG GGCAGTTGGG CAACTGCCGC AAACTTTTAT CAAAGATGTT
CATTTGATGG TAGCGGACCA ATGGACGGCG GCGCAAGCCT GCGTGAAGGC GGGCGCACAC
TGCATCACGC TTCAGGCAGA AGGCGATATT CATCTGCATC ATACGCTAAG CTGGCTTGGT
CAGCAGACCG TGCCCGTTAT TGGCGGTGAA ATGCCGGTGA TCCGGGGGAT TAGTTTATGC
CCGGCAACGC CTCTGGATGT CATTATCCCC ATTCTGAGCG ACGTTGAGGT TATTCAACTA
CTGGCAGTGA ACCCTGGATA CGGCAGTAAA ATGCGCTCCA GTGATTTGCA CGAGCGCGTG
GCGCAGCTTC TCTGTCTACT TGGTGATAAA CGCGAAGGTA AAATTATCGT TATTGATGGG
TCGTTAACGC AGGATCAGTT GCCTTCGCTG ATTGCACAGG GCATCAATCG TGTTGTTTCT
GGTAGTGCGT TATTTCGTGA TGATCGGCTG GTTGAGAATA CGCGGAGCTG GAGGGCGATG
TTTAAGGTTG CCGGGGATAC TACTTTCTTA CCCTCCACAG CATAA
|
|---|
| Protein sequence | MNSQFAGLTR EACVALLASY PLSVGILAGQ WIALHRYLQQ LEALNQPLLH LDLMDGQFCP
QFTVGPWAVG QLPQTFIKDV HLMVADQWTA AQACVKAGAH CITLQAEGDI HLHHTLSWLG
QQTVPVIGGE MPVIRGISLC PATPLDVIIP ILSDVEVIQL LAVNPGYGSK MRSSDLHERV
AQLLCLLGDK REGKIIVIDG SLTQDQLPSL IAQGINRVVS GSALFRDDRL VENTRSWRAM
FKVAGDTTFL PSTA
|
|---|
| |