Gene SeD_A3850 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3850 
Symbolgph 
ID6873753 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp3677183 
End bp3677941 
Gene Length759 bp 
Protein Length252 aa 
Translation table11 
GC content56% 
IMG OID642786815 
Productphosphoglycolate phosphatase 
Protein accessionYP_002217443 
Protein GI198244539 
COG category[R] General function prediction only 
COG ID[COG0546] Predicted phosphatases 
TIGRFAM ID[TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones76 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATAAGT TACAGAATAT TCGGGGCGTC GCCTTTGATC TTGACGGTAC GCTGGTGGAT 
AGCGCGCCGG GTCTTGCCGC GGCGGTGGAT ATGGCGCTGT ATGCGCTGGA ACTGCCGGTC
GCGGGCGAGG AGCGCGTGAT TACCTGGATT GGTAACGGCG CAGACGTATT GATGGAACGC
GCGCTGGCCT GGGCTCGCGA GGAGCGCGCC ACGCTGCGTA AGACGATGGG GAAACCGCCC
GTTGATGAAG ATATTCCTGC CGAGGAACAG GTACGCATTC TGCGTAAACT GTTCGACAGG
TATTATGGCG AAGTGGCGGA AGAGGGCACT TTTTTATTTC CGCATGTCGC CGACACGCTG
GGCGCGCTGC ACGCCAGCGG ATTGTCATTA GGTCTGGTGA CGAATAAGCC GACGCCGTTC
GTCGCGCCGT TGCTGGAATC GCTTGATATC GCCAAATACT TTAGTGTGGT TATCGGCGGC
GATGATGTGC AAAATAAGAA GCCGCATCCG GAGCCGCTGT TGCTGGTGGC AAGCCGGCTG
GGCATGATGC CGGAGCAGAT GCTTTTTGTC GGCGATTCGC GTAATGATAT TCAGGCTGCA
AAAGCGGCGG GCTGCCCTTC GGTTGGCCTG ACATACGGCT ACAATTATGG CGAAGCGATC
GCTCTTAGCG AGCCGGACGT CATTTATGAC AGTTTTAACG ATCTTTTGCC CGCACTTGGG
CTTCCGCATA GCGATAACCA GGAAATAAAA AATGACTAA
 
Protein sequence
MDKLQNIRGV AFDLDGTLVD SAPGLAAAVD MALYALELPV AGEERVITWI GNGADVLMER 
ALAWAREERA TLRKTMGKPP VDEDIPAEEQ VRILRKLFDR YYGEVAEEGT FLFPHVADTL
GALHASGLSL GLVTNKPTPF VAPLLESLDI AKYFSVVIGG DDVQNKKPHP EPLLLVASRL
GMMPEQMLFV GDSRNDIQAA KAAGCPSVGL TYGYNYGEAI ALSEPDVIYD SFNDLLPALG
LPHSDNQEIK ND