| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A3847 |
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| Symbol | |
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| ID | 6874201 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | + |
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| Start bp | 3669907 |
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| End bp | 3675678 |
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| Gene Length | 5772 bp |
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| Protein Length | 1923 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 642786812 |
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| Product | porin, autotransporter |
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| Protein accession | YP_002217440 |
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| Protein GI | 198242549 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG5271] AAA ATPase containing von Willebrand factor type A (vWA) domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 66 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAAAGA AAAAACTTAT TTCTATCGCT ATCGCTTTAA CGCTACAAAG TTATTACATT
CCGGCCATCG CCGCAGAAAA TAACGATGAT GAAAAAGAAT GTCCCAGTAA TATCTCCTCC
CTGCCTAAAG AAAAACGCGC AAAACTTTCA CCGACCTGCC TTGCTACACC TGAAAATGAT
AATCACTGGG GCTGGGTTGC TGGCGGCGTT GCTGCACTGG TCGCAGGTGT GGCTATTGGC
GTTGAAAATA ACGGTGGCGG AGATTCTAAT CATTCTTATA CCCCCCCTAC GCCCGATAAT
GGCGGCGATG ACAATGTGAT CCCGCCCGAC GATAGCGGCG ATGACGATGT AACCCCACCC
GACGATAGCG GCGATGACGA TGTAACCCCG CCCGACGATA GCGGCGATGA CGATGTAACC
CCGCCTGATG ATAGCGGCGA TGACGATGTA ACCCCGCCCG ACGATAGCGG CGATGACGAT
GTGACCCCGC CCGACGATAG CGGCGATGAC GATGTGACCC CGCCTGACGA TAGCGGCGAT
GACGATGTAA CCCCGCCCGA CGATAGCGGC GATGACGATG TGACCCCGCC CGATGATAGC
GGCGATGACG ATGTAACCCC GCCCGATGAT AGCGGCGATG ACGACGACAC GCCCCCAGAT
GACTCTGTTA TTACCTTCAG CAACGGCGTC ACCATCGATA AAGGCAAAGA CACCCTGACC
TTCGACAGCT TCAAACTGGA TAACGGCAGC GTTCTTGAGG GTGCCGTGTG GAATTATTCA
GAACAGGACA ACCAGTGGCA GCTCACCACC GCGGACGGTA AAACGCTGAA CGTCACCGGC
TGGGACGTGA CCGACGCCAA TGCCGCCGTG ATTGAAGGCA CCCAGGAAAA CGGTCTCTAC
TGGAAGTACG ACAGCCGGGG CTATCTGATT ATTGCCGACG ATAACACCAC CGTTATCAGC
GGCGATGACC AGGCGCATAA TTCCGATCGC GGCATGGATA TCAGCGGCCA GGATCGCACC
GGCGTGATTA TTTCCGGCGA TAGAACCGTC AACACGCTCA CCGGGGACTC CAGTGTGACC
GACGGTGCCA CCGGCATGGT TATCTCCGGT GACGGCACCA CCAACACCAT TTCGGGCCAC
TCCACGGTGG ACAACGCCAC CGGCGCGCTG ATTTCCGGCA ACGGCACCAC CACCAATTTC
GCCGGTGACA TTGCCGTGAG CGGCGGCGGT ACCGCCATCA TCATCGACGG CGACAACGCC
ACGATTAAGA ATACCGGTAC CTCTAACATC AGCGGCGCAG GCTCCACCGG CACCGTCATT
GACGGCAATA ACGCCCGCGT CAACAATGAC GGTGATATGA CCATCACCGA CGGCGGCACC
GGCGGCCACA TTACCGGCGA CAACGTGGTT ATCGATAACG CCGGGAGCAC TACCGTCAGC
GGCGCAGACG CCACGGCGCT GTATATCGAA GGCGACAACG CGCTCGTTAT CAACGAAGGT
AATCAGACTA TCTCCGGCGG CGCCGTCGGT ACGCGCATTG ACGGCGACGA CGCCCATACC
ACCAATACCG GTGATATCGC GGTGGATGGC GCGGGCTCTG CCGCCGTGAT TATCAACGGC
GACAACGGCA GCCTGACCCA GGCGGGCGAT CTGCTGGTCA CCGACGGCGC GATGGGCATC
ATCACCTACG GCACCGGAAA TGAAGCAAAA AATACCGGCA ACGCCACCGT GCGTGATGCG
GACTCGGTGG GTTTTGTGGT TGCAGGCGAA AAAAACACCT TCAAAAACAA AGGGGATATT
GACGTCAGCC TTAACGGCAC CGGCGCGCTG GTGAGCGGCG ATATGTCGCA GGTTACGCTG
GATGGCGATA TTAACGTTGT CTCAGTCCAG GACAGCGAAG GCGTGTTTAG CTCAGCGACA
GGGGTGAGCG TGAGCGGCGA CAGCAACGCC GTTGATATCA CCGGCAACGT AAATATCAGC
GCCGACTACG GGCAGGATGA CCTGGCTGCC GGGGCTCCCC CGTTAACTGG CGTTGTCGTC
GGCGGCAACG GCAATACCGT TACCCTTAAT GGCGCGCTGA ATATTGATGA CAACGATCTG
TCCGCCGCCA GCGGACAATA CCTGGACGTT GTTGGCCTGA GCGTAACAGG TGATGATAAC
GACGTTGAGA TTGACGGCGG TATTAATATC ACCCACAGCG AGGATCCACT TGATGGAACC
TCTGCAGACA TTACCGGCAT CAGCGTCAGC GGTAACAGTA CCGTTACGCT AAACGGTCAT
TCTACCATTG ATACCAACAC GGTAGTGGGG GGGCACGTTG TACTGGCGCG GGTCAACAAC
GGCGGCTCCC TGATTCTGGG TGATGACTCA GTTGTTGACG TTAATGTCAG TTATATACCC
ACAGGCTATT ACACCTACAA CGCGTTGCTG ATGGCTGATG GCGAAGGCAC ATCAATTGAA
AATAAAGGCG ATATTACAAG CCATGGCGTG TATTCCGTCA TTCGCGCAGA TAACGGCTCG
GAAGTCAGCA ACAGCGGAGA TATTCTGGTC TACGCGACCA GTAGCAACAG TAGTGAGGAT
CGTGCAGCCA TCACAAGGGC TAGTGGCGAG GGATCGGCTG TTCATAACAA AGCCGGCGGC
GATATCACCC TCATTTCTGA TCAGACGCCG CAGGGCAGTG GCGGTATTGA AGTATACCCA
TTGAAATGGT ACACCCACAC CTTTTACGCC ATGATGGCTT CGGATTATGG CGATGTCGTT
AACGATGAGG GCGCCACGAT CCATTTGCAG GGGGCAGGTG TATATGGCGT TACCGCCAGC
CGAGGTAAAG CACTAAACGA AGGCGATATC TATCTGGATG GCCTTGTCCC GACGCTGGAC
GATGAAAATA ACATCACCAG CACCAGCTAC TGGCAGCCAT CATCGCTCTA TCTCACCAGC
TCAGGAATGG TGGCGGGTTC CACCGATGCC GATGGCGACG CCACCGCCAT CAACACCGGC
AACATTACCG TCAACAACGC CGGGTTCGGC ATGATGGCGC TTAATGGCGG CACCGCCATT
AACCAGGGCG TGATCACCCT GACCGCCGAT GACGGCGTGA CCGGTCAGGC AGACGAGCTG
GTCGGGATGG CGGCGCTCAA CGGCGGCGTC GTCATCAACG ACACCAGCGG CGTGATTAAC
ATCGACGCCG ATTACGGCCA GGCGTTTCTG AGCGACAGTT CCAGCTACAT CATCAATAAC
GGCTCTATCA ACCTTAACGG CAGCCCGATG GATGATACTG ATTCACACAT GGGCGGCACG
CCAACGGACA AAATCTGGAT TCAGTCTCTG CCCGGCAGCG GCGACAGCGA CACCAGGACC
TCCGACACAG GTTTCTTCAC CGCCGGTACG CTGGCCAACT ACGGTACTGA AACCCTGAAC
GGCGATGTGG ACGTTAACGG GGGCTGGCTG TACAACGAAG CGGGCGCCTC GCTCACCGTC
AACGGCACCG TGACGATTAA CGGCGGGGCT AACGCGCTGG CTAACTACGG GACGCTGGAC
GCGGACGCTA TTTCCACCTG GCACAGCCTC TTTAATGAAG CGGACGGCAG CATCACCACC
GATCTGTTAA CCCTTAATGG CGACGTTACT TTTTACAATA ACGGCGATTT CACCGGCTCC
ATAGCGGGCA CCAGCTACCA GCAGGAAATC GTCAATACTG GCGATATGAC GGTGGCGGAA
GATGGCAAAT CGCTGGTCAG CGGCAGCTTC TATTTCTATA ACGAAGAGGA CGCAACGCTT
ACCAACAGCG GCAGCGCGGT GGAAGGCGGC GAGAACACCA TCATCAATCT GACGCGCGCC
AACGATTCGC TGACCCAGGT GAACAGCGGC ACCATCACCG CCACTAACGG TTACAGCGCC
ATCACCACGG CCAACGGCAG CAATGACCCC AAATGGATCT GGAACACCGC AACCGGCGTG
ATTAACGGTA TTAACCCGGA TGCGCCGCTA ATCAATTTGG GCCGCGGCTA TAACTTCGGC
AACCAGGGCA CTATCAACGT GCAGGGCGAT AACGCCGTGG CGATTAGCGG CGGCACCAGC
AGTTATGTCA TTAACCTGGT CAATAGCGGC ACCATCAACG TCGGTACCGT GCAGGGCAAG
GAGGACGGCA CCAACGGCAC CGGGCTTATC GGCATCAAGG GCAACGGTAA TGCCACCACC
ATAAACAACA CCGCAGACGG CGTGATCAAC GTTTACGCGG ATGACTCGTA TGCGTTTGGC
GGCAAGACCA AAGCCATCAT CAACAACGGC GAAATCAACC TGCTGTGCGA CAGCGGCTGC
GACATCTACG CGCCGGGTAC TACGGGCACG CAGAACGACC ATAACGGGAC AGCGGACATC
GTCATCCCGG ATGCGACTAC CGCCCCGACC GAGGGCAGCA TCCCGACGCC GCCAGCGGAT
CCCAACGCGC CGCAGCAGCT CTCCAACTAT ATTGTTGGCA CCAACGCCGA CGGTAGCTCC
GGTACGCTGA AAGCCAATAA CCTGGTGATT GGCGACAACG TGAAGGTGGA TACCGGCTTT
ACCAGCGGTA CGGCGGATAC CACCGTGGTG GTGGATAACG CCTTCACCGG CAGCAATATC
CAGGGCGCGG ACAACATCAC TTCCACCAGC GTGGTGTGGA ACGCCCAGGG TAGCCAGGAT
GCCGACGGCA ACGTTGACGT CACCATGACC AAAAACGCCT ATGCCGATGT GGCCACCGAC
AGCTCGGTAA GCGACGTGGC GAGTGCGCTG GACGCCGGTT ACACCAACAA CGAGCTGTAC
ACCAGCCTTA ATGTGGGGAC TACCGCCGAG CTGAACAGCG CACTGAAGCA GGTGAGCGGT
GCTCAAGCCA CCACGGTATT CCGTGAAGCC CGGGTGTTAA GCAACCGCTT TACCATGCTG
GCCGACGCCG CGCCGCAGAT CAAAGATGGC CTGGCGTTTA ACGTCGTAGC GAAAGGCGAC
CCGCGCGCGG AGCTGGGCAA CGACACCCAG TACGACATGC TGGCATTACG CCAGACGTTG
GATCTCACCG CCAGCCAGAA TCTGACGCTG GAGTATGGTA TTGCGCGTCT GGATGGCGAC
GGTTCGAAAA CCGCGGGCGA TAACGGCCTG ACCGGCGGCT ACAGTCAGTT CTTTGGTCTG
AAGCACAGCA TGGCGTTTGA TGAAGGTCTG GCGTGGAACA ACAGCCTGCG CTATGACGTA
CATAACCTCG ACAGCAGCCG TTCTGTCGCC TATGGCGATG TCAATAAAAT TGCCGATTCC
GACATGCGTC AGCAGTACCT TGAGTTTCGC AGTGAAGGGG CGAAAACTTT CACCATGATG
AGTGATACGC TGAAAGTCAC GCCGTATGCC GGAGTGAAAT TCCGTCACAC CATGGAAGAT
GGCTACAAAG AGCGCAGCGC CGGAGATTTT AACCTGTCCA TGAACTCTGG CAACGAAACG
GCGGTAGACT CTATTGTCGG CCTGAAGCTG GATTACGCCG GGAAAGACGG CTGGAGCGCC
ACAGCTACCC TGGAAGGCGG CCCGAACCTG AGCTACAGCA AGAGCCAGCG TACAGCGTCA
TTACAGGGTG CGGCGGGTCA ATCGTTCGGC GTGGATGACG GTCAAAAAGG CGGCGGCATT
AATGGCCTGG CAACCATCGG CGTGAAATAC AGCAGCAATG ATACCGCGCT ACATCTGGAT
GCCTACCAGT GGAAGGAAGA CGGTATCAGC GATAAAGGCT TTATGCTTAA CGTTAAGAAA
ACATTTCGTT AA
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| Protein sequence | MQKKKLISIA IALTLQSYYI PAIAAENNDD EKECPSNISS LPKEKRAKLS PTCLATPEND
NHWGWVAGGV AALVAGVAIG VENNGGGDSN HSYTPPTPDN GGDDNVIPPD DSGDDDVTPP
DDSGDDDVTP PDDSGDDDVT PPDDSGDDDV TPPDDSGDDD VTPPDDSGDD DVTPPDDSGD
DDVTPPDDSG DDDVTPPDDS GDDDVTPPDD SGDDDDTPPD DSVITFSNGV TIDKGKDTLT
FDSFKLDNGS VLEGAVWNYS EQDNQWQLTT ADGKTLNVTG WDVTDANAAV IEGTQENGLY
WKYDSRGYLI IADDNTTVIS GDDQAHNSDR GMDISGQDRT GVIISGDRTV NTLTGDSSVT
DGATGMVISG DGTTNTISGH STVDNATGAL ISGNGTTTNF AGDIAVSGGG TAIIIDGDNA
TIKNTGTSNI SGAGSTGTVI DGNNARVNND GDMTITDGGT GGHITGDNVV IDNAGSTTVS
GADATALYIE GDNALVINEG NQTISGGAVG TRIDGDDAHT TNTGDIAVDG AGSAAVIING
DNGSLTQAGD LLVTDGAMGI ITYGTGNEAK NTGNATVRDA DSVGFVVAGE KNTFKNKGDI
DVSLNGTGAL VSGDMSQVTL DGDINVVSVQ DSEGVFSSAT GVSVSGDSNA VDITGNVNIS
ADYGQDDLAA GAPPLTGVVV GGNGNTVTLN GALNIDDNDL SAASGQYLDV VGLSVTGDDN
DVEIDGGINI THSEDPLDGT SADITGISVS GNSTVTLNGH STIDTNTVVG GHVVLARVNN
GGSLILGDDS VVDVNVSYIP TGYYTYNALL MADGEGTSIE NKGDITSHGV YSVIRADNGS
EVSNSGDILV YATSSNSSED RAAITRASGE GSAVHNKAGG DITLISDQTP QGSGGIEVYP
LKWYTHTFYA MMASDYGDVV NDEGATIHLQ GAGVYGVTAS RGKALNEGDI YLDGLVPTLD
DENNITSTSY WQPSSLYLTS SGMVAGSTDA DGDATAINTG NITVNNAGFG MMALNGGTAI
NQGVITLTAD DGVTGQADEL VGMAALNGGV VINDTSGVIN IDADYGQAFL SDSSSYIINN
GSINLNGSPM DDTDSHMGGT PTDKIWIQSL PGSGDSDTRT SDTGFFTAGT LANYGTETLN
GDVDVNGGWL YNEAGASLTV NGTVTINGGA NALANYGTLD ADAISTWHSL FNEADGSITT
DLLTLNGDVT FYNNGDFTGS IAGTSYQQEI VNTGDMTVAE DGKSLVSGSF YFYNEEDATL
TNSGSAVEGG ENTIINLTRA NDSLTQVNSG TITATNGYSA ITTANGSNDP KWIWNTATGV
INGINPDAPL INLGRGYNFG NQGTINVQGD NAVAISGGTS SYVINLVNSG TINVGTVQGK
EDGTNGTGLI GIKGNGNATT INNTADGVIN VYADDSYAFG GKTKAIINNG EINLLCDSGC
DIYAPGTTGT QNDHNGTADI VIPDATTAPT EGSIPTPPAD PNAPQQLSNY IVGTNADGSS
GTLKANNLVI GDNVKVDTGF TSGTADTTVV VDNAFTGSNI QGADNITSTS VVWNAQGSQD
ADGNVDVTMT KNAYADVATD SSVSDVASAL DAGYTNNELY TSLNVGTTAE LNSALKQVSG
AQATTVFREA RVLSNRFTML ADAAPQIKDG LAFNVVAKGD PRAELGNDTQ YDMLALRQTL
DLTASQNLTL EYGIARLDGD GSKTAGDNGL TGGYSQFFGL KHSMAFDEGL AWNNSLRYDV
HNLDSSRSVA YGDVNKIADS DMRQQYLEFR SEGAKTFTMM SDTLKVTPYA GVKFRHTMED
GYKERSAGDF NLSMNSGNET AVDSIVGLKL DYAGKDGWSA TATLEGGPNL SYSKSQRTAS
LQGAAGQSFG VDDGQKGGGI NGLATIGVKY SSNDTALHLD AYQWKEDGIS DKGFMLNVKK
TFR
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