Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A3847 |
Symbol | |
ID | 6874201 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | + |
Start bp | 3669907 |
End bp | 3675678 |
Gene Length | 5772 bp |
Protein Length | 1923 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 642786812 |
Product | porin, autotransporter |
Protein accession | YP_002217440 |
Protein GI | 198242549 |
COG category | [R] General function prediction only |
COG ID | [COG5271] AAA ATPase containing von Willebrand factor type A (vWA) domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 66 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAAAGA AAAAACTTAT TTCTATCGCT ATCGCTTTAA CGCTACAAAG TTATTACATT CCGGCCATCG CCGCAGAAAA TAACGATGAT GAAAAAGAAT GTCCCAGTAA TATCTCCTCC CTGCCTAAAG AAAAACGCGC AAAACTTTCA CCGACCTGCC TTGCTACACC TGAAAATGAT AATCACTGGG GCTGGGTTGC TGGCGGCGTT GCTGCACTGG TCGCAGGTGT GGCTATTGGC GTTGAAAATA ACGGTGGCGG AGATTCTAAT CATTCTTATA CCCCCCCTAC GCCCGATAAT GGCGGCGATG ACAATGTGAT CCCGCCCGAC GATAGCGGCG ATGACGATGT AACCCCACCC GACGATAGCG GCGATGACGA TGTAACCCCG CCCGACGATA GCGGCGATGA CGATGTAACC CCGCCTGATG ATAGCGGCGA TGACGATGTA ACCCCGCCCG ACGATAGCGG CGATGACGAT GTGACCCCGC CCGACGATAG CGGCGATGAC GATGTGACCC CGCCTGACGA TAGCGGCGAT GACGATGTAA CCCCGCCCGA CGATAGCGGC GATGACGATG TGACCCCGCC CGATGATAGC GGCGATGACG ATGTAACCCC GCCCGATGAT AGCGGCGATG ACGACGACAC GCCCCCAGAT GACTCTGTTA TTACCTTCAG CAACGGCGTC ACCATCGATA AAGGCAAAGA CACCCTGACC TTCGACAGCT TCAAACTGGA TAACGGCAGC GTTCTTGAGG GTGCCGTGTG GAATTATTCA GAACAGGACA ACCAGTGGCA GCTCACCACC GCGGACGGTA AAACGCTGAA CGTCACCGGC TGGGACGTGA CCGACGCCAA TGCCGCCGTG ATTGAAGGCA CCCAGGAAAA CGGTCTCTAC TGGAAGTACG ACAGCCGGGG CTATCTGATT ATTGCCGACG ATAACACCAC CGTTATCAGC GGCGATGACC AGGCGCATAA TTCCGATCGC GGCATGGATA TCAGCGGCCA GGATCGCACC GGCGTGATTA TTTCCGGCGA TAGAACCGTC AACACGCTCA CCGGGGACTC CAGTGTGACC GACGGTGCCA CCGGCATGGT TATCTCCGGT GACGGCACCA CCAACACCAT TTCGGGCCAC TCCACGGTGG ACAACGCCAC CGGCGCGCTG ATTTCCGGCA ACGGCACCAC CACCAATTTC GCCGGTGACA TTGCCGTGAG CGGCGGCGGT ACCGCCATCA TCATCGACGG CGACAACGCC ACGATTAAGA ATACCGGTAC CTCTAACATC AGCGGCGCAG GCTCCACCGG CACCGTCATT GACGGCAATA ACGCCCGCGT CAACAATGAC GGTGATATGA CCATCACCGA CGGCGGCACC GGCGGCCACA TTACCGGCGA CAACGTGGTT ATCGATAACG CCGGGAGCAC TACCGTCAGC GGCGCAGACG CCACGGCGCT GTATATCGAA GGCGACAACG CGCTCGTTAT CAACGAAGGT AATCAGACTA TCTCCGGCGG CGCCGTCGGT ACGCGCATTG ACGGCGACGA CGCCCATACC ACCAATACCG GTGATATCGC GGTGGATGGC GCGGGCTCTG CCGCCGTGAT TATCAACGGC GACAACGGCA GCCTGACCCA GGCGGGCGAT CTGCTGGTCA CCGACGGCGC GATGGGCATC ATCACCTACG GCACCGGAAA TGAAGCAAAA AATACCGGCA ACGCCACCGT GCGTGATGCG GACTCGGTGG GTTTTGTGGT TGCAGGCGAA AAAAACACCT TCAAAAACAA AGGGGATATT GACGTCAGCC TTAACGGCAC CGGCGCGCTG GTGAGCGGCG ATATGTCGCA GGTTACGCTG GATGGCGATA TTAACGTTGT CTCAGTCCAG GACAGCGAAG GCGTGTTTAG CTCAGCGACA GGGGTGAGCG TGAGCGGCGA CAGCAACGCC GTTGATATCA CCGGCAACGT AAATATCAGC GCCGACTACG GGCAGGATGA CCTGGCTGCC GGGGCTCCCC CGTTAACTGG CGTTGTCGTC GGCGGCAACG GCAATACCGT TACCCTTAAT GGCGCGCTGA ATATTGATGA CAACGATCTG TCCGCCGCCA GCGGACAATA CCTGGACGTT GTTGGCCTGA GCGTAACAGG TGATGATAAC GACGTTGAGA TTGACGGCGG TATTAATATC ACCCACAGCG AGGATCCACT TGATGGAACC TCTGCAGACA TTACCGGCAT CAGCGTCAGC GGTAACAGTA CCGTTACGCT AAACGGTCAT TCTACCATTG ATACCAACAC GGTAGTGGGG GGGCACGTTG TACTGGCGCG GGTCAACAAC GGCGGCTCCC TGATTCTGGG TGATGACTCA GTTGTTGACG TTAATGTCAG TTATATACCC ACAGGCTATT ACACCTACAA CGCGTTGCTG ATGGCTGATG GCGAAGGCAC ATCAATTGAA AATAAAGGCG ATATTACAAG CCATGGCGTG TATTCCGTCA TTCGCGCAGA TAACGGCTCG GAAGTCAGCA ACAGCGGAGA TATTCTGGTC TACGCGACCA GTAGCAACAG TAGTGAGGAT CGTGCAGCCA TCACAAGGGC TAGTGGCGAG GGATCGGCTG TTCATAACAA AGCCGGCGGC GATATCACCC TCATTTCTGA TCAGACGCCG CAGGGCAGTG GCGGTATTGA AGTATACCCA TTGAAATGGT ACACCCACAC CTTTTACGCC ATGATGGCTT CGGATTATGG CGATGTCGTT AACGATGAGG GCGCCACGAT CCATTTGCAG GGGGCAGGTG TATATGGCGT TACCGCCAGC CGAGGTAAAG CACTAAACGA AGGCGATATC TATCTGGATG GCCTTGTCCC GACGCTGGAC GATGAAAATA ACATCACCAG CACCAGCTAC TGGCAGCCAT CATCGCTCTA TCTCACCAGC TCAGGAATGG TGGCGGGTTC CACCGATGCC GATGGCGACG CCACCGCCAT CAACACCGGC AACATTACCG TCAACAACGC CGGGTTCGGC ATGATGGCGC TTAATGGCGG CACCGCCATT AACCAGGGCG TGATCACCCT GACCGCCGAT GACGGCGTGA CCGGTCAGGC AGACGAGCTG GTCGGGATGG CGGCGCTCAA CGGCGGCGTC GTCATCAACG ACACCAGCGG CGTGATTAAC ATCGACGCCG ATTACGGCCA GGCGTTTCTG AGCGACAGTT CCAGCTACAT CATCAATAAC GGCTCTATCA ACCTTAACGG CAGCCCGATG GATGATACTG ATTCACACAT GGGCGGCACG CCAACGGACA AAATCTGGAT TCAGTCTCTG CCCGGCAGCG GCGACAGCGA CACCAGGACC TCCGACACAG GTTTCTTCAC CGCCGGTACG CTGGCCAACT ACGGTACTGA AACCCTGAAC GGCGATGTGG ACGTTAACGG GGGCTGGCTG TACAACGAAG CGGGCGCCTC GCTCACCGTC AACGGCACCG TGACGATTAA CGGCGGGGCT AACGCGCTGG CTAACTACGG GACGCTGGAC GCGGACGCTA TTTCCACCTG GCACAGCCTC TTTAATGAAG CGGACGGCAG CATCACCACC GATCTGTTAA CCCTTAATGG CGACGTTACT TTTTACAATA ACGGCGATTT CACCGGCTCC ATAGCGGGCA CCAGCTACCA GCAGGAAATC GTCAATACTG GCGATATGAC GGTGGCGGAA GATGGCAAAT CGCTGGTCAG CGGCAGCTTC TATTTCTATA ACGAAGAGGA CGCAACGCTT ACCAACAGCG GCAGCGCGGT GGAAGGCGGC GAGAACACCA TCATCAATCT GACGCGCGCC AACGATTCGC TGACCCAGGT GAACAGCGGC ACCATCACCG CCACTAACGG TTACAGCGCC ATCACCACGG CCAACGGCAG CAATGACCCC AAATGGATCT GGAACACCGC AACCGGCGTG ATTAACGGTA TTAACCCGGA TGCGCCGCTA ATCAATTTGG GCCGCGGCTA TAACTTCGGC AACCAGGGCA CTATCAACGT GCAGGGCGAT AACGCCGTGG CGATTAGCGG CGGCACCAGC AGTTATGTCA TTAACCTGGT CAATAGCGGC ACCATCAACG TCGGTACCGT GCAGGGCAAG GAGGACGGCA CCAACGGCAC CGGGCTTATC GGCATCAAGG GCAACGGTAA TGCCACCACC ATAAACAACA CCGCAGACGG CGTGATCAAC GTTTACGCGG ATGACTCGTA TGCGTTTGGC GGCAAGACCA AAGCCATCAT CAACAACGGC GAAATCAACC TGCTGTGCGA CAGCGGCTGC GACATCTACG CGCCGGGTAC TACGGGCACG CAGAACGACC ATAACGGGAC AGCGGACATC GTCATCCCGG ATGCGACTAC CGCCCCGACC GAGGGCAGCA TCCCGACGCC GCCAGCGGAT CCCAACGCGC CGCAGCAGCT CTCCAACTAT ATTGTTGGCA CCAACGCCGA CGGTAGCTCC GGTACGCTGA AAGCCAATAA CCTGGTGATT GGCGACAACG TGAAGGTGGA TACCGGCTTT ACCAGCGGTA CGGCGGATAC CACCGTGGTG GTGGATAACG CCTTCACCGG CAGCAATATC CAGGGCGCGG ACAACATCAC TTCCACCAGC GTGGTGTGGA ACGCCCAGGG TAGCCAGGAT GCCGACGGCA ACGTTGACGT CACCATGACC AAAAACGCCT ATGCCGATGT GGCCACCGAC AGCTCGGTAA GCGACGTGGC GAGTGCGCTG GACGCCGGTT ACACCAACAA CGAGCTGTAC ACCAGCCTTA ATGTGGGGAC TACCGCCGAG CTGAACAGCG CACTGAAGCA GGTGAGCGGT GCTCAAGCCA CCACGGTATT CCGTGAAGCC CGGGTGTTAA GCAACCGCTT TACCATGCTG GCCGACGCCG CGCCGCAGAT CAAAGATGGC CTGGCGTTTA ACGTCGTAGC GAAAGGCGAC CCGCGCGCGG AGCTGGGCAA CGACACCCAG TACGACATGC TGGCATTACG CCAGACGTTG GATCTCACCG CCAGCCAGAA TCTGACGCTG GAGTATGGTA TTGCGCGTCT GGATGGCGAC GGTTCGAAAA CCGCGGGCGA TAACGGCCTG ACCGGCGGCT ACAGTCAGTT CTTTGGTCTG AAGCACAGCA TGGCGTTTGA TGAAGGTCTG GCGTGGAACA ACAGCCTGCG CTATGACGTA CATAACCTCG ACAGCAGCCG TTCTGTCGCC TATGGCGATG TCAATAAAAT TGCCGATTCC GACATGCGTC AGCAGTACCT TGAGTTTCGC AGTGAAGGGG CGAAAACTTT CACCATGATG AGTGATACGC TGAAAGTCAC GCCGTATGCC GGAGTGAAAT TCCGTCACAC CATGGAAGAT GGCTACAAAG AGCGCAGCGC CGGAGATTTT AACCTGTCCA TGAACTCTGG CAACGAAACG GCGGTAGACT CTATTGTCGG CCTGAAGCTG GATTACGCCG GGAAAGACGG CTGGAGCGCC ACAGCTACCC TGGAAGGCGG CCCGAACCTG AGCTACAGCA AGAGCCAGCG TACAGCGTCA TTACAGGGTG CGGCGGGTCA ATCGTTCGGC GTGGATGACG GTCAAAAAGG CGGCGGCATT AATGGCCTGG CAACCATCGG CGTGAAATAC AGCAGCAATG ATACCGCGCT ACATCTGGAT GCCTACCAGT GGAAGGAAGA CGGTATCAGC GATAAAGGCT TTATGCTTAA CGTTAAGAAA ACATTTCGTT AA
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Protein sequence | MQKKKLISIA IALTLQSYYI PAIAAENNDD EKECPSNISS LPKEKRAKLS PTCLATPEND NHWGWVAGGV AALVAGVAIG VENNGGGDSN HSYTPPTPDN GGDDNVIPPD DSGDDDVTPP DDSGDDDVTP PDDSGDDDVT PPDDSGDDDV TPPDDSGDDD VTPPDDSGDD DVTPPDDSGD DDVTPPDDSG DDDVTPPDDS GDDDVTPPDD SGDDDDTPPD DSVITFSNGV TIDKGKDTLT FDSFKLDNGS VLEGAVWNYS EQDNQWQLTT ADGKTLNVTG WDVTDANAAV IEGTQENGLY WKYDSRGYLI IADDNTTVIS GDDQAHNSDR GMDISGQDRT GVIISGDRTV NTLTGDSSVT DGATGMVISG DGTTNTISGH STVDNATGAL ISGNGTTTNF AGDIAVSGGG TAIIIDGDNA TIKNTGTSNI SGAGSTGTVI DGNNARVNND GDMTITDGGT GGHITGDNVV IDNAGSTTVS GADATALYIE GDNALVINEG NQTISGGAVG TRIDGDDAHT TNTGDIAVDG AGSAAVIING DNGSLTQAGD LLVTDGAMGI ITYGTGNEAK NTGNATVRDA DSVGFVVAGE KNTFKNKGDI DVSLNGTGAL VSGDMSQVTL DGDINVVSVQ DSEGVFSSAT GVSVSGDSNA VDITGNVNIS ADYGQDDLAA GAPPLTGVVV GGNGNTVTLN GALNIDDNDL SAASGQYLDV VGLSVTGDDN DVEIDGGINI THSEDPLDGT SADITGISVS GNSTVTLNGH STIDTNTVVG GHVVLARVNN GGSLILGDDS VVDVNVSYIP TGYYTYNALL MADGEGTSIE NKGDITSHGV YSVIRADNGS EVSNSGDILV YATSSNSSED RAAITRASGE GSAVHNKAGG DITLISDQTP QGSGGIEVYP LKWYTHTFYA MMASDYGDVV NDEGATIHLQ GAGVYGVTAS RGKALNEGDI YLDGLVPTLD DENNITSTSY WQPSSLYLTS SGMVAGSTDA DGDATAINTG NITVNNAGFG MMALNGGTAI NQGVITLTAD DGVTGQADEL VGMAALNGGV VINDTSGVIN IDADYGQAFL SDSSSYIINN GSINLNGSPM DDTDSHMGGT PTDKIWIQSL PGSGDSDTRT SDTGFFTAGT LANYGTETLN GDVDVNGGWL YNEAGASLTV NGTVTINGGA NALANYGTLD ADAISTWHSL FNEADGSITT DLLTLNGDVT FYNNGDFTGS IAGTSYQQEI VNTGDMTVAE DGKSLVSGSF YFYNEEDATL TNSGSAVEGG ENTIINLTRA NDSLTQVNSG TITATNGYSA ITTANGSNDP KWIWNTATGV INGINPDAPL INLGRGYNFG NQGTINVQGD NAVAISGGTS SYVINLVNSG TINVGTVQGK EDGTNGTGLI GIKGNGNATT INNTADGVIN VYADDSYAFG GKTKAIINNG EINLLCDSGC DIYAPGTTGT QNDHNGTADI VIPDATTAPT EGSIPTPPAD PNAPQQLSNY IVGTNADGSS GTLKANNLVI GDNVKVDTGF TSGTADTTVV VDNAFTGSNI QGADNITSTS VVWNAQGSQD ADGNVDVTMT KNAYADVATD SSVSDVASAL DAGYTNNELY TSLNVGTTAE LNSALKQVSG AQATTVFREA RVLSNRFTML ADAAPQIKDG LAFNVVAKGD PRAELGNDTQ YDMLALRQTL DLTASQNLTL EYGIARLDGD GSKTAGDNGL TGGYSQFFGL KHSMAFDEGL AWNNSLRYDV HNLDSSRSVA YGDVNKIADS DMRQQYLEFR SEGAKTFTMM SDTLKVTPYA GVKFRHTMED GYKERSAGDF NLSMNSGNET AVDSIVGLKL DYAGKDGWSA TATLEGGPNL SYSKSQRTAS LQGAAGQSFG VDDGQKGGGI NGLATIGVKY SSNDTALHLD AYQWKEDGIS DKGFMLNVKK TFR
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