Gene SeD_A3534 details

Gene Information

• Locus tag: SeD_A3534
• Symbol: parE
• ID: 6874309
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853
• Kingdom: Bacteria
• Replicon accession: NC_011205
• Strand: -
• Start bp: 3391014
• End bp: 3392906
• Gene Length: 1893 bp
• Protein Length: 630 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 642786524
• Product: DNA topoisomerase IV subunit B
• Protein accession: YP_002217161
• Protein GI: 198243780
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
• TIGRFAM ID: [TIGR01055] DNA topoisomerase IV, B subunit, proteobacterial

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 69
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGACGCAAA CTTATAACGC TGATGCCATT GAGGTACTCA CTGGGCTTGA GCCGGTACGC 
CGCCGCCCGG GGATGTACAC CGATACGACC CGTCCCAACC ATTTGGGTCA GGAAGTAATT 
GATAATAGTG TGGATGAAGC ACTGGCAGGT CACGCCAAAC GCGTGGATGT CATTTTACAT 
GCCGATCAAT CGCTGGAAGT GATTGACGAC GGACGCGGGA TGCCGGTGGA TATCCATCCG 
GAAGAGGGGG TTCCGGCGGT AGAACTGATC CTCTGTCGGC TTCATGCCGG CGGTAAATTC 
TCCAATAAGA ACTATCAGTT CTCTGGTGGT CTGCATGGGG TGGGGATTTC GGTCGTGAAT 
GCCCTGTCAA AGCGCGTGGA AGTGACCGTG CGCCGCGACG GTCAGGTCTA TAACATCGCG 
TTTGAAAACG GCGAGAAAGT GCAGGATTTG CAGGTTGTCG GCACCTGCGG TAAACGTAAT 
ACTGGCACCA GCGTCCATTT CTGGCCGGAC GAAAGTTTCT TCGACAGCCC GCGTTTTTCT 
GTCTCTCGCT TAATGCACGT TCTGAAAGCA AAAGCGGTGC TGTGTCCCGG CGTGGAAATC 
ACTTTTAAAG ATGAAGTGAA TAACAGCGAG CAGCGCTGGT GCTACCAGGA TGGTCTGAAC 
GACTATCTGG GCGAAGCGGT AAACGGCCTG CCGACGCTGC CGGAAAAGCC GTTTATCGGT 
AATTTTAACG GTGAAACGGA AGCTGTTGAC TGGGCGCTAT TGTGGCTGCC GGAAGGCGGC 
GAATTACTGA CGGAAAGCTA CGTCAACCTG ATCCCGACCA TGCAGGGGGG GACGCACGTC 
AACGGTCTGC GCCAGGGCCT GCTCGACGCG ATGCGCGAAT TTTGCGAATA CCGCAATATT 
CTGCCGCGCG GCGTCAAACT GTCGGCGGAA GATATCTGGG ATCGCTGCGC TTATGTGCTC 
TCCGTGAAAA TGCAGGACCC GCAATTTGCC GGGCAGACCA AAGAGCGTCT GTCGTCGCGT 
CAATGTGCGG CATTTGTTTC CGGCGTGGTG AAAGATGCCT TCAGCCTGTG GCTGAACCAG 
AACGTGCAGG CGGCGGAACA ACTGGCAGAG ATGGCGATTG CCAGCGCGCA GCGGCGACTG 
CGCGCCGCAA AAAAAGTGGT ACGCAAAAAG CTCACCAGCG GTCCGGCGTT GCCGGGGAAA 
CTGGCGGACT GTACCGCGCA GGATCTTAAT CGGACCGAGC TGTTCCTTGT GGAAGGGGAT 
TCGGCGGGCG GTTCCGCCAA GCAGGCGCGC GATCGCGAAT ATCAGGCGAT CATGCCGCTC 
AAAGGTAAGA TCCTTAACAC TTGGGAAGTC TCTTCCGATG AAGTGCTGGC CTCGCAAGAG 
GTGCATGATA TTTCCGTGGC GATCGGTATC GATCCGGACA GCGACGATCT GAGTCAGCTG 
CGCTACGGCA AGATCTGTAT CCTGGCGGAT GCGGACTCCG ATGGTTTGCA TATCGCTACT 
CTGCTTTGCG CGCTGTTTGT CAGACATTTC CGCGCGCTGG TGAAGAATGG TCATGTCTAC 
GTCGCGCTGC CGCCGCTATA CCGTATCGAT TTGGGTAAAG AGGTCTATTA CGCGCTGACG 
GAAGAAGAGA AGGCGGGCGT ACTGGAACAA CTGAAGCGTA AGAAAGGCAA GCCGAACGTA 
CAGCGTTTCA AAGGCCTGGG TGAAATGAAC CCGATGCAGT TACGCGAAAC CACGCTTGAT 
CCAAATACTC GCCGCCTGGT GCAGCTCACC ATTAGCGATG AAGACGATCA GCGTACTAAC 
GCGATGATGG ATATGCTGCT GGCGAAGAAA CGTTCTGAAG ATCGACGCAA CTGGCTACAG 
GAAAAAGGCG ATCTCGCGGA TCTCGACGTG TAA 

 

Protein sequence

MTQTYNADAI EVLTGLEPVR RRPGMYTDTT RPNHLGQEVI DNSVDEALAG HAKRVDVILH 
ADQSLEVIDD GRGMPVDIHP EEGVPAVELI LCRLHAGGKF SNKNYQFSGG LHGVGISVVN 
ALSKRVEVTV RRDGQVYNIA FENGEKVQDL QVVGTCGKRN TGTSVHFWPD ESFFDSPRFS 
VSRLMHVLKA KAVLCPGVEI TFKDEVNNSE QRWCYQDGLN DYLGEAVNGL PTLPEKPFIG 
NFNGETEAVD WALLWLPEGG ELLTESYVNL IPTMQGGTHV NGLRQGLLDA MREFCEYRNI 
LPRGVKLSAE DIWDRCAYVL SVKMQDPQFA GQTKERLSSR QCAAFVSGVV KDAFSLWLNQ 
NVQAAEQLAE MAIASAQRRL RAAKKVVRKK LTSGPALPGK LADCTAQDLN RTELFLVEGD 
SAGGSAKQAR DREYQAIMPL KGKILNTWEV SSDEVLASQE VHDISVAIGI DPDSDDLSQL 
RYGKICILAD ADSDGLHIAT LLCALFVRHF RALVKNGHVY VALPPLYRID LGKEVYYALT 
EEEKAGVLEQ LKRKKGKPNV QRFKGLGEMN PMQLRETTLD PNTRRLVQLT ISDEDDQRTN 
AMMDMLLAKK RSEDRRNWLQ EKGDLADLDV