Gene SeD_A3252 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3252 
Symbolcse4 
ID6873426 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp3123947 
End bp3125005 
Gene Length1059 bp 
Protein Length352 aa 
Translation table11 
GC content52% 
IMG OID642786267 
Productcrispr-associated protein, Cse4 family 
Protein accessionYP_002216908 
Protein GI198244668 
COG category 
COG ID 
TIGRFAM ID[TIGR01869] CRISPR system CASCADE complex protein CasC/Cse4 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.633483 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones63 
Fosmid unclonability p-value0.732205 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAACGT TTATTCAGCT CCATTTACTG ACCGCTTACC CCGCCGCTAA CCTGAACCGT 
GATGATACCG GTGCGCCAAA AACCGTGGTG CTTGGCGGAG CAACACGTCT GCGTATCTCC 
TCTCAGAGCC TGAAACGCGC CTGGCGTACA TCTGAGTTAT TTGAACAGGC ATTAGCTGGC 
CATATTGGTA TTCGTACTGG TCGCATTGCT CGTGAGGCGG CGCAAATCCT CGTTGATAGC 
GGCATTGACG CTAAAAAAGC GGTTGAGTAT GTGGAAAAAA TTGCCAACTG TTTTGGCAAG 
GTAAAGGCGG AAAAGAAACC AAAAGATGAA CTGACGAATG CTGAAACCGA GCAACTGGTG 
CATATCAGCC CAGCTGAATT TGAGGGCGTA AAAGCGCTAG CGCACCGTCT GGCGGAAGAA 
AAACGCGCGC CAAAAGAGGA AGAGCTTGCA CTGCTACGTA AAGATCGCAT GGCTGTCGAT 
ATTGCCATGT TTGGCCGTAT GCTGGCGAAT AAGCCCGATT TTAACGTGGA AGCTGCCTGT 
CAGGTCGCCC ACGCCTTCGG CGTCAGCGAA ACGATCGTCG AAGACGATTT CTTTACTGCT 
GTGGATGACC TACGCCAGGC ATCGGCAGAA GATGCAGGCG CAGGCCATCT CGGCGAAACC 
GGCTTTGGCT CCGCGCTGTT TTACACCTAT ATCTGCATCG ACAAAGATCT GCTGGTGAAA 
AACCTGAACG GCAATGAAGA ACTGGCAAAC AAAACGCTGC GCGCCTTTAC TGAAGCGGCG 
CTGAAAGTGT CGCCGACCGG CAAACAGAAC AGCTTTGCCA GCCGTGCCTA TGCCTCGTGG 
GCGCTGGCGG AAAAAGGCAC CGACCAACCA CGTTCACTGG CGGCCGCGTT TTATGAACCG 
ATCAACGGTA CAGACCAATT GAACGTTGCG GTTAAGCGTA TTACCGCGCT GCGTGAAAAT 
ATGAATGCGG TCTATGCACA GGAGACGGCG TTCAAAGACT TTAACGTTAT GAATCAGCAG 
GGAAGCATGA AAGACGTGCT TGATTTCATC TGCGCGTAA
 
Protein sequence
MTTFIQLHLL TAYPAANLNR DDTGAPKTVV LGGATRLRIS SQSLKRAWRT SELFEQALAG 
HIGIRTGRIA REAAQILVDS GIDAKKAVEY VEKIANCFGK VKAEKKPKDE LTNAETEQLV 
HISPAEFEGV KALAHRLAEE KRAPKEEELA LLRKDRMAVD IAMFGRMLAN KPDFNVEAAC 
QVAHAFGVSE TIVEDDFFTA VDDLRQASAE DAGAGHLGET GFGSALFYTY ICIDKDLLVK 
NLNGNEELAN KTLRAFTEAA LKVSPTGKQN SFASRAYASW ALAEKGTDQP RSLAAAFYEP 
INGTDQLNVA VKRITALREN MNAVYAQETA FKDFNVMNQQ GSMKDVLDFI CA