Gene SeD_A3096 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3096 
Symbol 
ID6871873 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp2989114 
End bp2989791 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content56% 
IMG OID642786120 
ProductDNA-binding transcriptional regulator CsiR 
Protein accessionYP_002216766 
Protein GI198242095 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.236033 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones73 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGCCC TTTCCCAACC GACGGCCATA GATGGCTATC GCTGGCTTAA AAATGACATT 
ATTCGCGGCA CTTATCAGCC GGATGAGAAA CTGCGGATGA GTTTATTAAC CGCCCGCTAT 
GCGCTCGGCG TAGGGCCGCT GCGTGAGGCG CTGTCGCAAC TGGTGGCGGA ACGGCTGGTC 
ACCGTGGTGA ATCAAAAAGG CTATCGCGTG GCATCCATGT CAGAGGCGGA ACTCCTCGAT 
ATTTTTGACG CGCGCGCCAA TATGGAAGCG ATGCTGGTAC GCCTGGCGAT TGAACGCGGC 
GATGATGCGT GGGAGGCGGA GATCCTGGCG CGAGCGCATA TGCTCAGTAA ACTGGAAGCC 
AGCGATGCCA GTGAACATAT GCTCGATGAA TGGGATCAGC GCCACCAGGC GTTCCATTCC 
GCCATTGTCG CCGGGTGCGG CTCCCACTAT CTGCTACAGA TGCGCGAACG CTTATTTGAC 
CTGGCGGCCC GCTACCGCTT TATTTGGTTA CGTGAAACCG TTCTGTCCGT CGAGATGCTG 
GAAGATAAAC ATATCCAGCA TCACACGCTA ACCGATGCGA TACTGGCGCG CGAGGCGGCA 
CGCGCCAGCG AATTAATGCG TCAGCATTTG CTGACGCCGA TTTCCATTAT TCGCCAGGCG 
ATGGCAGGGA AAATGTAG
 
Protein sequence
MTALSQPTAI DGYRWLKNDI IRGTYQPDEK LRMSLLTARY ALGVGPLREA LSQLVAERLV 
TVVNQKGYRV ASMSEAELLD IFDARANMEA MLVRLAIERG DDAWEAEILA RAHMLSKLEA 
SDASEHMLDE WDQRHQAFHS AIVAGCGSHY LLQMRERLFD LAARYRFIWL RETVLSVEML 
EDKHIQHHTL TDAILAREAA RASELMRQHL LTPISIIRQA MAGKM