| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A3051 |
|---|
| Symbol | |
|---|
| ID | 6875231 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | + |
|---|
| Start bp | 2943387 |
|---|
| End bp | 2944418 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 642786081 |
|---|
| Product | phage portal protein, pbsx family |
|---|
| Protein accession | YP_002216727 |
|---|
| Protein GI | 198242747 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5518] Bacteriophage capsid portal protein |
|---|
| TIGRFAM ID | [TIGR01540] phage portal protein, PBSX family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 0.0247481 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGAAAGA GTAAGAAAAA CCGCGCTGCG GCGACGAATC AGCTCAAGCA TAAAAGCCAA
ACTTCAGCCG AAGCATTCAG CTTTGGTGAT CCCGTTCCTG TTCTGGACCG CCGTGAACTG
CTGGACTATG TGGAATGCGT ACAGATGGAC CGCTGGTATG AGCCGCCCGT CAGCTTTGAC
GGACTGGCAC GAACCTTCCG CGCCGCCGTG CATCACAGCT CACCAATTGC GGTGAAATGC
AACATTCTGA CCAGTACCTA CATCCCTCAC CCGCTGCTCA GCCAGCAGGC TTTTTCACGT
TTTGTGCAGG ACTATCTGGT ATTTGGTAAC GCCTACCTGG AGAAACGCAC GAACCGCTTC
GGTGAAGTTA TCGCCCTTGA GCCTGCTCTG GCAAAATACA CCCGACGCGG GTTAGACCTG
GATACCTACT GGTTTGTGCA ATACGGTATG ACAACCCAGC CGTATCAGTT CACGAAAGGC
AGCATTTTTC ATCTGATGGA ACCGGACATC AACCAGGAGA TCTACGGCCT GCCAGGTTAT
CTTTCTGCCA TTCCATCAGC CCTGCTCAAC GAGTCCGCCA CGCTGTTCCG CCGGAAGTAT
TACATTAACG GCAGTCATGC AGGCTTCATC ATGTACATGA CCGATGCCGC GCAGAACCAA
GAGGATGTGA ACAACCTCCG CAATGCGATG AAAAGCGCCA AAGGCCCTGG CAACTTCCGC
AACCTGTTTA TGTACTCGCC TAACGGCAAA AAGGACGGGC TTCAGATCAT CCCGTTGTCA
GAAGTCGCGG CGAAGGATGA GTTTCTGAAT ATCAAGAACG TGAGCCGGGA CGACATGATG
GCGGCACACC GTGTGCCGCC GCAAATGATG GGGATAATGC CTAATAATGT TGGGGGGTTT
GGGGATATCG AAAAAGCTAG CAAGGTATTT GTTAGGAATG AATTAACCCC CCTTCAGAAG
CGATTTAGTG AGTTAAACGA ATGGATTAAT GAAAAAATAA TCACTTACTC ACAATATTCT
ATTGGAGACT AA
|
|---|
| Protein sequence | MGKSKKNRAA ATNQLKHKSQ TSAEAFSFGD PVPVLDRREL LDYVECVQMD RWYEPPVSFD
GLARTFRAAV HHSSPIAVKC NILTSTYIPH PLLSQQAFSR FVQDYLVFGN AYLEKRTNRF
GEVIALEPAL AKYTRRGLDL DTYWFVQYGM TTQPYQFTKG SIFHLMEPDI NQEIYGLPGY
LSAIPSALLN ESATLFRRKY YINGSHAGFI MYMTDAAQNQ EDVNNLRNAM KSAKGPGNFR
NLFMYSPNGK KDGLQIIPLS EVAAKDEFLN IKNVSRDDMM AAHRVPPQMM GIMPNNVGGF
GDIEKASKVF VRNELTPLQK RFSELNEWIN EKIITYSQYS IGD
|
|---|
| |