Gene SeD_A2978 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A2978 
Symbol 
ID6871234 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp2868195 
End bp2868875 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content54% 
IMG OID642786015 
Producthypothetical protein 
Protein accessionYP_002216665 
Protein GI198242843 
COG category[S] Function unknown 
COG ID[COG3148] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.0338202 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones82 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCAATA ACGCTGTCCT TCAGTTACGC GCCGAACGGC TTGCGCGCGC TACACGCCCT 
TTTCTTGCCA GAGGCAATCG GGTTCGCCGC TGTCAACGCT GCCTGCTGCC GCTAAAATCT 
TGCCTGTGTG ATACGTTAAC GCCTTCTCAG GCGAAAAGCC GTTTTTGTCT GGTCATGTTT 
GACACTGAAC CGATGAAACC CAGCAATACC GGCCGGCTGA TAGCCGATAT TTTGCCGGAT 
ACCGCGGCGT TTCAGTGTTC GCGTACCGAG CCGACGCAGG CGTTGCTGGA GCTGGTACGG 
CATCCGGATT ATCAACCGAT AGTGGTTTTT CCTGCATCCT ACGCCGGCGA AGCGCGCGAG 
GTCATTTCCA CCCCGCCCGC CGGGAAACCG CCGCTGTTTA TCATGCTGGA CGGCACCTGG 
CCCGAAGCAC GTAAAATGTT TCGTAAAAGC CCTTATCTGG ATCATCTGCC GGTCATTTCC 
GTCGATTTAT CGCGTCTTTC AGCTTATCGT CTGCGTGAAA TCCATGCCGA AGGGCAATAT 
TGTACCGCCG AAGTCGCCAT AGCGTTGTTA GATCTGGCGG GAGATACCGA GGCAGCAACC 
AGTTTAGGTG AACATTTTAC CCGTTTTAAA ACGCGCTATC TGGCAGGAAA AACGCAACAT 
CCGGGAAACG TCACAGCATA A
 
Protein sequence
MINNAVLQLR AERLARATRP FLARGNRVRR CQRCLLPLKS CLCDTLTPSQ AKSRFCLVMF 
DTEPMKPSNT GRLIADILPD TAAFQCSRTE PTQALLELVR HPDYQPIVVF PASYAGEARE 
VISTPPAGKP PLFIMLDGTW PEARKMFRKS PYLDHLPVIS VDLSRLSAYR LREIHAEGQY 
CTAEVAIALL DLAGDTEAAT SLGEHFTRFK TRYLAGKTQH PGNVTA