| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A2073 |
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| Symbol | |
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| ID | 6875654 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | + |
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| Start bp | 2007208 |
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| End bp | 2008701 |
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| Gene Length | 1494 bp |
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| Protein Length | 497 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 642785186 |
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| Product | ggdef domain-containing protein |
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| Protein accession | YP_002215852 |
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| Protein GI | 198244426 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.986087 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.000116677 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATTTGC ATCATAAAGC GCTCAGGCAC TTTATCTCGG CAAGCGTCAT CGTTTTGACA
TCGTCCTTCC TGATTTACGA ACTTATTGCC AGCGACAGGG CAATGAATGC CTATATGCGT
TATATCATGG AGAGAGCCGA TTCGTCGTTT TTGTACGATA AGTACCAGAA TCAGAGCATC
GCCGCACATT TGATGCGAAC TTTTGAAGCG CCGGGAGACC CCGTCACTGC AGAAAAACGC
CGCGCGTTTT GCGACGCCTT TGAGGCTATT AACGGTACGC ACGGCGTCAA CCTGACCCGG
CATAATTATC CGGGGCTACA TGGCACCCTG CAAACCGCCG CTACACAGTG TACCGATAAT
CTTGATGACG CCCTTTTACT GCCTGCATTT GATCAGGCGG TAAGCATCAA CCGTTCGCAG
GACGACCACA GTCACGGGCT GGGCACACTG GAGCTTAAAT TCCGTTATTA CGTTGATTTA
AATAAACATT ATGTCTATTT CTATGATTTA ATCAACTCAC GGCGCTTCGC CATGCATCGT
TGGACTTTTT TACAAAAAGG CACAATGGGT ATTAACAGAA AAGATATAGA TAAACTTTTT
ACCGGCCGTA CGGTTATTTC AAGTATTTAC ATGGATGATA TTACCCAGGA AAACGTCATG
AGCTTTTTAA CGCCAGTCTA TCTGGCGGGA ACGTTAAAAG GTATCGTGAT GGTGGATGTT
AACCAGGATA ATTTAAAAAA TATTTTTTAT ACCCAGGACC GTCCGCTGGT TTGGCGTTAT
CTTAACGTAA CACTAAAGGA CATGGACTCC GGAAAAGAAA TTATTATTAA TCAAAGCAAA
AATAATCTGT TTCAATATGT GAATTATAGC CATGATATCC CGGGTGGACT GCGCGTTTCG
TTGTCCCTTG ATTTAACCTA TTTCCTTGTC TCGTCCTGGA AAGCGCTGGC CTTTTACTTA
CTGGCAACGG CGCTCCTGCT TAATATGGTA CGGATGCACT TTCGGCTTTA TCGCAACGTC
ACACGCGAAA ATATTAGCGA TGCCATGACC GGGCTTTACA ACCGTAAAAT ATTAACACCG
GAGCTGGAAC AGCGACTGCA ACGCCTGGTC AATGCCGGGA CGCCGGTGAC ATTTGTCGCT
ATTGATTGCG ACAGGTTAAA ACTGATCAAC GATACCCAGG GGCACCAGGA AGGCGACCGA
ATTATAACCC TGTTGGCGAA AGCGATTAAA ACATCGATTC GTAAAAGCGA TTATGCCATT
CGCCTCGGCG GCGATGAGTT CTGTATTATT CTTGTTGATT ATGCGGCGGA TTTGGCTATC
CATCTGCCGG AGCGTATTAT TCGTAACCTG CAAATTATCG CACCGGATAA GACAGTCCAT
TTTTCCGCCG GGATTTATAA TATGCAGCCC AATGATACGA TTAATGATGC CTACCAGGCT
TCCGATGCGC AGCTCTATCT GAACAAACAG CAAAAACAAC ATCGTTCATC ATAG
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| Protein sequence | MNLHHKALRH FISASVIVLT SSFLIYELIA SDRAMNAYMR YIMERADSSF LYDKYQNQSI
AAHLMRTFEA PGDPVTAEKR RAFCDAFEAI NGTHGVNLTR HNYPGLHGTL QTAATQCTDN
LDDALLLPAF DQAVSINRSQ DDHSHGLGTL ELKFRYYVDL NKHYVYFYDL INSRRFAMHR
WTFLQKGTMG INRKDIDKLF TGRTVISSIY MDDITQENVM SFLTPVYLAG TLKGIVMVDV
NQDNLKNIFY TQDRPLVWRY LNVTLKDMDS GKEIIINQSK NNLFQYVNYS HDIPGGLRVS
LSLDLTYFLV SSWKALAFYL LATALLLNMV RMHFRLYRNV TRENISDAMT GLYNRKILTP
ELEQRLQRLV NAGTPVTFVA IDCDRLKLIN DTQGHQEGDR IITLLAKAIK TSIRKSDYAI
RLGGDEFCII LVDYAADLAI HLPERIIRNL QIIAPDKTVH FSAGIYNMQP NDTINDAYQA
SDAQLYLNKQ QKQHRSS
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