| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A1948 |
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| Symbol | |
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| ID | 6873182 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | - |
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| Start bp | 1876092 |
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| End bp | 1877585 |
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| Gene Length | 1494 bp |
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| Protein Length | 497 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 642785070 |
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| Product | type III secretion outer membrane pore, YscC/HrcC family |
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| Protein accession | YP_002215736 |
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| Protein GI | 198244927 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 0.118723 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTAGTAA ATAAACGTTT AATCTTAATT TTACTATTTA TACTCAATAC AGCAAAGAGT
GATGAGTTAT CATGGAAAGG TAATGACTTC ACCCTTTATG CCAGACAAAT GCCATTAGCA
GAGGTTTTAC ATCTGCTCTC AGAGAACTAT GATACGGCTA TTACTATTAG CCCATTGATA
ACAGCTACAT TTAGTGGAAA AATTCCGCCT GGACCACCGG TCGATATTTT GAATAACCTG
GCAGCACAAT ATGATTTGCT TACCTGGTTT GATGGCAGCA TGTTATATGT ATATCCTGCA
TCGTTATTAA AACATCAGGT TATCACTTTC AATATTTTAT CTACTGGACG GTTCATTCAT
TACTTACGCA GCCAGAATAT CCTTTCATCA CCGGGATGCG AGGTTAAAGA AATTACCGGT
ACCAAAGCTG TGGAGGTGAG CGGTGTTCCC AGCTGCCTGA CTCGTATTAG TCAATTAGCT
TCAGTGCTGG ATAATGCGTT AATCAAACGA AAAGACAGTG CGGTGAGTGT AAGTATATAC
ACGCTTAAGT ATGCCACTGC GATGGATACC CAATACCAAT ATCGCGATCA GTCCGTCGTG
GTTCCAGGGG TCGTGAGTGT ATTGCGTGAG ATGAGTAAAA CCAGCGTACC GGCGTCATCG
ACGAACAATG GTTCACCCGC TACACAGGCA TTGCCCATGT TTGCTGCCGA CCCACGCCAG
AATGCAGTGA TCGTTCGTGA TTATGCGGCC AATATGGCCG GGTATCGGAA ACTTATCACA
GAATTAGATC AACGCCAGCA GATGATAGAG ATTTCGGTGA AAATTATCGA TGTTAATGCT
GGAGATATTA ACCAGTTAGG CATCGACTGG GGAACGGCAG TGTCGCTGGG TGGCAAGAAA
ATTGCGTTCA ATACAGGTTT GAATGACGGT GGTGCTAGCG GTTTTTCAAC GGTAATCAGC
GATACCTCAA ACTTTATGGT GCGTTTGAAT GCCCTGGAAA AAAGCTCTCA GGCTTATGTA
CTTTCCCAGC CATCTGTGGT GACTTTAAAT AATATCCAGG CTGTGCTGGA TAAAAATATT
ACTTTCTATA CCAAACTGCA GGGAGAAAAA GTGGCTAAAC TTGAATCCAT CACTACGGGT
TCTTTGTTGC GCGTTACACC TCGCTTGTTA AATGATAATG GCACGCAAAA AATAATGCTT
AATCTTAATA TTCAGGATGG ACAACAAAGT GATACGCAAA GCGAAACAGA CCCGCTGCCC
GAAGTGCAAA ATTCTGAAAT TGCTTCGCAG GCCACATTAT TGGCCGGGCA AAGTCTATTG
CTGGGAGGAT TTAAACAAGG TAAACAAATC CACTCGCAAA ATAAAATTCC TTTATTGGGC
GATATTCCTG TCGTAGGCCA TTTGTTTCGC AATGATACGA CTCAAGTACA TAGTGTAATC
AGGCTTTTTT TGATTAAAGC CTCAGTAGTA AATAATGGCA TATCTCATGG TTAA
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| Protein sequence | MVVNKRLILI LLFILNTAKS DELSWKGNDF TLYARQMPLA EVLHLLSENY DTAITISPLI
TATFSGKIPP GPPVDILNNL AAQYDLLTWF DGSMLYVYPA SLLKHQVITF NILSTGRFIH
YLRSQNILSS PGCEVKEITG TKAVEVSGVP SCLTRISQLA SVLDNALIKR KDSAVSVSIY
TLKYATAMDT QYQYRDQSVV VPGVVSVLRE MSKTSVPASS TNNGSPATQA LPMFAADPRQ
NAVIVRDYAA NMAGYRKLIT ELDQRQQMIE ISVKIIDVNA GDINQLGIDW GTAVSLGGKK
IAFNTGLNDG GASGFSTVIS DTSNFMVRLN ALEKSSQAYV LSQPSVVTLN NIQAVLDKNI
TFYTKLQGEK VAKLESITTG SLLRVTPRLL NDNGTQKIML NLNIQDGQQS DTQSETDPLP
EVQNSEIASQ ATLLAGQSLL LGGFKQGKQI HSQNKIPLLG DIPVVGHLFR NDTTQVHSVI
RLFLIKASVV NNGISHG
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