Gene SeD_A1724 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1724 
Symbol 
ID6875089 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp1661182 
End bp1661979 
Gene Length798 bp 
Protein Length265 aa 
Translation table11 
GC content52% 
IMG OID642784861 
Productputative regulatory protein 
Protein accessionYP_002215529 
Protein GI198243136 
COG category[G] Carbohydrate transport and metabolism
[K] Transcription 
COG ID[COG1349] Transcriptional regulators of sugar metabolism 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.8346 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones57 
Fosmid unclonability p-value0.195936 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGATGA GCCAACAGCG CCCCGACCGT ATCAAACAGA TGTTGCATTA CCTTTGGCAA 
CACAGGCACC TCTCAACACA ACAAGCTATT GAGCTTTTTG GCTATGCAGA GGCAACCGTG
CGCCGGGATT TTCACTATAT TGCCAGCCGT TATCCCGGTA TGGTTCGCGG CCATGGTTGT
ATTGACTTCG ACGACAGTAC GGAAGATAAA GAATATGTTT TCGACGTTAA GCGAACGTTA
CAAAGCGAGG CGAAACGCGA AATCGCCGCC CTCGCCCGCA CGTTCATCAA GGATGGAGAC
TGCTTTTTTC TCGACTCCGG CTCCACCTGT CTGGAACTGG CAAAATGTCT GGTCGACGCC
AAAGTAAAAG TCATTTGCAA TGACATCAAA ATCGCTAACG AACTGGGTGG CTTCCCACAC
GTAGAGAGCT ACATTATTGG CGGACTGATT CGCCCCGGTT ACTTTTCGGT GGGCGAGAGT
CTGGCGCTGG AGATGATTAA CGCCTTTGCC GTTGAACGCG CCTTTATCTC CTGCGATGCG
CTGTCGATTG AAACGGGCAT CACCAACGCT ACCATGTTTG AAGTAGGCGT CAAAACGCGC
ATTATTCAGC GCTCACGCGA GGTCATATTG ATGGCCGATC ACTCAAAGTT TGATACTGTA
GAACCCCATG CGGTGGCGAC GCTGTCCTGT ATTACTACCA TTCTTAGCGA CAGTGCGCTC
CCGTCTGCTA TCGCCCGACG TTATCAGCAG GCGGGATGCC GTCTCATCAT GTCAGACCCC
TCATCAGGAG CGCGCTAA
 
Protein sequence
MLMSQQRPDR IKQMLHYLWQ HRHLSTQQAI ELFGYAEATV RRDFHYIASR YPGMVRGHGC 
IDFDDSTEDK EYVFDVKRTL QSEAKREIAA LARTFIKDGD CFFLDSGSTC LELAKCLVDA
KVKVICNDIK IANELGGFPH VESYIIGGLI RPGYFSVGES LALEMINAFA VERAFISCDA
LSIETGITNA TMFEVGVKTR IIQRSREVIL MADHSKFDTV EPHAVATLSC ITTILSDSAL
PSAIARRYQQ AGCRLIMSDP SSGAR