Gene SeD_A0880 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A0880 
Symbol 
ID6873387 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp873362 
End bp874357 
Gene Length996 bp 
Protein Length331 aa 
Translation table11 
GC content56% 
IMG OID642784075 
Product6-phosphogluconolactonase 
Protein accessionYP_002214750 
Protein GI198245773 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2706] 3-carboxymuconate cyclase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones79 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACAAA CAGTCTATAC CGCCAGCCCT GAGAGTCAGC AAATTCACGT CTGGAGCCTG 
AACCACGAAG GGACGCTGAC GCTGGTGCAG GTCGTGGATG TGCCCGGTCA GGTTCAGCCG 
ATGGTGGTCA GTCCGGATAA ACGCTACCTC TATGTCGGCG TGCGCCCGGA GTTTCGTGTC 
CTGGCGTATC GTATTGCGCC GGATGATGGC GCGCTGACGT TTGCCGCCGA ATCCGCCCTG 
CCGGGTAGCC CGACCCATAT TTCTACCGAT CATCATGGTC GTTTTGTCTT TGTCGGATCG 
TATAACGCCG GTAATGTCAG CGTGACGCGC TTACAGGATG GCCTGCCGGT TGAGTTGGTG 
GATGTGGTGG AGGGGCTGGA CGGCTGCCAC TCGGCAAATA TTACGCCTGA TAACCGTACC 
CTGTGGGTGC CTGCGCTAAA ACAGGATCGC ATTTGTCTGT TTACGCTAAG CGATGACGGC 
CATCTGGTGG CCCAGGAGCC GGCGGAAGTA AATACAGTTG AAGGGGCAGG CCCGCGTCAT 
ATGGTCTTCC ACCCGAATCG ACAATATGCG TATTGCGTCA ATGAACTGAA CAGTTCGGTG 
GATGTCTGGC AGCTTAAAAA TCCGCATGGC GAGATAGAGT GCGTGCAAAC GCTGGATATG 
ATGCCCGCCG ATTTTTCCGA TACCCGCTGG GCGGCGGATA TTCATATTAC GCCGGATGGA 
CGGCATCTGT ATGCCTGTGA CCGCACCGCC AGTCTGATTA CCGTCTTTAG TGTCTCCGAA 
GATGGCAGCG TACTGAGCGT TGAAGGCTTC CAGCCGACGG AAGCCCAACC GCGCGGCTTT 
AATATCGACA ATAGCGGAAA ATACCTGATT GCTGCGGGTC AAAAATCACA TCATATCGCG 
GTCTATGAAA TTACGGGCAC TCAGGGGTTG CTGACGGAAA AAGGCCGTTA TGCCGTCGGC 
CAGGGGCCAA TGTGGGTTGT GGTGAACGCG TACTAA
 
Protein sequence
MKQTVYTASP ESQQIHVWSL NHEGTLTLVQ VVDVPGQVQP MVVSPDKRYL YVGVRPEFRV 
LAYRIAPDDG ALTFAAESAL PGSPTHISTD HHGRFVFVGS YNAGNVSVTR LQDGLPVELV 
DVVEGLDGCH SANITPDNRT LWVPALKQDR ICLFTLSDDG HLVAQEPAEV NTVEGAGPRH 
MVFHPNRQYA YCVNELNSSV DVWQLKNPHG EIECVQTLDM MPADFSDTRW AADIHITPDG 
RHLYACDRTA SLITVFSVSE DGSVLSVEGF QPTEAQPRGF NIDNSGKYLI AAGQKSHHIA 
VYEITGTQGL LTEKGRYAVG QGPMWVVVNA Y