| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A0747 |
|---|
| Symbol | cobD |
|---|
| ID | 6874315 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | + |
|---|
| Start bp | 743179 |
|---|
| End bp | 744273 |
|---|
| Gene Length | 1095 bp |
|---|
| Protein Length | 364 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642783947 |
|---|
| Product | threonine-phosphate decarboxylase |
|---|
| Protein accession | YP_002214633 |
|---|
| Protein GI | 198243919 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0079] Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase |
|---|
| TIGRFAM ID | [TIGR01140] L-threonine-O-3-phosphate decarboxylase
[TIGR01141] histidinol-phosphate aminotransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00550171 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 74 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGTTAT TCAACAGCGC GCATGGCAGT AATATTCGGG AAGCCGCGAC GGTGTTGGGC
ATCTCGCCTG ACCAGTTACT GGATTTTAGC GCAAACATTA ATCCGCTGGG TATGCCTGTC
AGCGTGAAAC GCGCGCTTAT CGACAATCTG GACTGCATTG AGCGCTACCC GGACGCCGAT
TATTTTCATT TGCACCAGGC GCTGGCGCGT CATCATCAGG TGCCGGCATC GTGGATACTG
GCGGGAAATG GCGAGACGGA GTCAATCTTT ACCGTGGCGA GCGGTCTTAA ACCGCGTCGT
GCAATGATTG TCACGCCAGG TTTCGCGGAG TATGGCCGGG CGCTGGCGCA AAGTGGCTGT
GAAATTCGTC GCTGGTCTCT ACGCGAAGCG GATGGCTGGC AGCTTACCGA TGCCATTCTT
GAGGCGTTGA CGCCCGATCT GGACTGCCTG TTTCTGTGTA CGCCCAATAA TCCTACCGGC
CTGCTGCCGG AGCGGCAGTT ATTACAGGCC ATTGCCGATC GCTGCAAATC GCTGAACATT
AACCTGATCC TGGATGAAGC GTTTATCGAT TTTATTCCGC ATGAGGCGGG CTTTATTCCT
GCTCTTAAAG ATAATCCGCA TATCTGGGTG CTGCGTTCGC TGACCAAATT TTATGCCATT
CCCGGCCTGC GGTTGGGATA TCTCGTCAAC AGCGATGACG CGGCGGTAGC GCGGATGCGT
CGCCAACAAA TGCCGTGGTC GATTAACGCG CTGGCGGCGC TGGCCGGTGA GGTAGCGTTA
CAGGATAGCG CCTGGCAACA GGCGACCTGG TATTGGTTAC GGGAGGAGGG CGCCCGGTTT
TATCAGGCGC TTTGTCAGCT CCCCCTGCTG ACGGTCTATC CCGGGCGGGC AAACTATCTG
TTGTTACGCT GTGAGCGAGA GGATATTGAT CTGCAGCGAC GGTTGCTGAC GCAGCGGATT
TTAATCCGTA GCTGCGCTAA CTACCCGGGG CTGGACAGCC GCTATTATCG TGTGGCGATA
CGCAGCGCTG CGCAAAACGA GCGTCTGCTG TCGGCGCTGC GCAATGTGCT TACCGGTATA
ACCCCTGCTG ATTGA
|
|---|
| Protein sequence | MALFNSAHGS NIREAATVLG ISPDQLLDFS ANINPLGMPV SVKRALIDNL DCIERYPDAD
YFHLHQALAR HHQVPASWIL AGNGETESIF TVASGLKPRR AMIVTPGFAE YGRALAQSGC
EIRRWSLREA DGWQLTDAIL EALTPDLDCL FLCTPNNPTG LLPERQLLQA IADRCKSLNI
NLILDEAFID FIPHEAGFIP ALKDNPHIWV LRSLTKFYAI PGLRLGYLVN SDDAAVARMR
RQQMPWSINA LAALAGEVAL QDSAWQQATW YWLREEGARF YQALCQLPLL TVYPGRANYL
LLRCEREDID LQRRLLTQRI LIRSCANYPG LDSRYYRVAI RSAAQNERLL SALRNVLTGI
TPAD
|
|---|
| |