Gene SeD_A0558 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A0558 
Symbol 
ID6874434 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp573155 
End bp574288 
Gene Length1134 bp 
Protein Length377 aa 
Translation table11 
GC content50% 
IMG OID642783778 
Productouter membrane protein 
Protein accessionYP_002214465 
Protein GI198243252 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.551548 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones76 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAATTA AAATAACAGC GTTGGCGGCA TCGATCGGCG CGGCAGTGGC TTTCATGCCT 
TTCGCCACTC AGGCGGAAAT CATCGTTTTA AAACAAGATC CCCAGGCGGG TAATCCACTC 
AGCCGACTCA ATTTCACCGT CGGCGGGAGT ATTCGTCCGC AGTTCCAGAA TATGACCGGC 
AATGACGGCG CGAACGGTTA TAAACGTAAT GGTTTTGATG GCGGGACGCG TTTCCGCTTC 
GCCGCGGATT ATTATCTGTT TGATGATATC AGTTGGATTA GCTATTACGA GCTGGGCGTC 
AATATCCCTG CGGTATTTGA CTGGGATAAC CATTATGCGA AGGGCGCGAC TGATACCACT 
CGCCGTATGC TGTATACCGG CTTCAAGAGC GCGACGTGGG GAACGCTGAC CTTCGGTCAA 
CAGAACAGCA TTTATTACGA TGTGGTGGGC GTAAAAACCG ATATCTGGGA TTACGACATG 
ATAGGTCAGG CGCCGGGCAA CGGGATTAAC GGCGACTACG ATGGTTCTTA TCGCACGCGT 
AAGTCATTGA AGTATAAGAA AAGCATTGGC AATGTCGATC TCTACGCGTC TTATCTGTTC 
AGCGACGATT ATAATGCCAA TAACGGCCTG AATTACAAGC GTAAAGGCGG CGGTTCTTTA 
GGCGCGGATT ATCATCTCAC CGACGATCTG ACCTGGGGGA CGGCATGGAA CTATACCCGT 
GCGGAGATGC GCGGCAACAG CAATAAAACT TACGATCAAA ATATTGTCGG TACCGCGTTA 
AGCTGGACGC CGGAAAACTG GACTATCGCC GCAGGCGGCG GTTGGTATCA GAACTTTATG 
ACGACCAAAA AAGTGTCTGT GAATGATTAC TTTGCCGGCG ATGCGTGGGG TCTGGAATAT 
TTTGTCGGTT ACGCTTTCCC GATTGGTCAG TATGCCGTGA AAGCTATTCA ACCGTACTTT 
ATGGGCGACC GCATTGAATA TGTGAATGGC CGCGACTATC TGCGCACCGA TAACGGCGTG 
GGGATCACCT TCCAACTGGA TTATGGTTTC CGCGTTGATT ATGAACATGT TTTCACTTCC 
AGCACTGACA ATCTGGGCGA TATGAACCTG GTGCGTCTGC GTTACGATTT CTAA
 
Protein sequence
MTIKITALAA SIGAAVAFMP FATQAEIIVL KQDPQAGNPL SRLNFTVGGS IRPQFQNMTG 
NDGANGYKRN GFDGGTRFRF AADYYLFDDI SWISYYELGV NIPAVFDWDN HYAKGATDTT 
RRMLYTGFKS ATWGTLTFGQ QNSIYYDVVG VKTDIWDYDM IGQAPGNGIN GDYDGSYRTR 
KSLKYKKSIG NVDLYASYLF SDDYNANNGL NYKRKGGGSL GADYHLTDDL TWGTAWNYTR 
AEMRGNSNKT YDQNIVGTAL SWTPENWTIA AGGGWYQNFM TTKKVSVNDY FAGDAWGLEY 
FVGYAFPIGQ YAVKAIQPYF MGDRIEYVNG RDYLRTDNGV GITFQLDYGF RVDYEHVFTS 
STDNLGDMNL VRLRYDF