Gene SeD_A0478 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A0478 
Symbol 
ID6874453 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp493568 
End bp495079 
Gene Length1512 bp 
Protein Length503 aa 
Translation table11 
GC content43% 
IMG OID642783704 
Producthypothetical protein 
Protein accessionYP_002214391 
Protein GI198244191 
COG category[R] General function prediction only 
COG ID[COG0790] FOG: TPR repeat, SEL1 subfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones74 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAATTA AATTTTTATC ATTATGTATT TTAGCGGGTG TTTTATTTGT TAGCCAGGTG 
AATGCTTCAG CGAACAACGG TAAAGATGAT GTAAAATATG CTGCGCTTAC CCAGAAGGAT 
CTTGATGCTT TGCCTGTGGA AAAAAGAGCT TCGGTTCTGG ATGAACTGGG GTTTATCCAT 
GAATACGGCC TTAATGTACC GATGAATCGC GAACAGGCGT TGCAGTATTA CAAGCAGGCC 
TGTGAGCTTG GCGGTAACTA CGGCTGTTAT AATGTGAAGT ATGCTTATCA GTATGGCGAC 
GGAGTGGCCA AAGATAGCGC TCAGGCCAAT AAGTATGCTA AGAAAATGAA TCTGGATAAT 
TTATTGATTG AGCAAGAATA TATTGATAAG TTTTCGCAAG AAATTTTCAC GGCAAAAGTA 
TTGGCCGATA CGGATAAATC GCAGCGACCA GAATTTATTA ATGCACTATT TAATTTTCTA 
AATAATAGGC CAGAGAGCGA TGCGCTTTTT TTTAGTCGTA TCGGATTTAA TCAGGAAAAA 
ACGTTCCGCC TTGCTACGCT ATGGGTGCAG GACGGCGATC CACAAATGGA TTATCAACTG 
GGGTTACTCA CCCTTAATGA TTTCTCTGGT CATTATGTGG ATGAGCCTTA TAAAGCCAGG 
CCGGCCTCGT TGAAATGGTT TCGCGCCGCC GCGGAAAAAG GCGTCGTTGA GGCCCAATCT 
CTCTTGGGGG GTATTTATTC GGGGGGAGAG GGCGATGAGT GGGGGATTAA GCCAGACATT 
CAGGAAGCAC AAAAATGGTA TGGACAGGCG GCTAAGCAGG GGGACAGCGA TGCACAGATT 
GCGTTAGGTA AAATCTATTA TTCTGGCGCA ACAGGGCGCA CTGATTACGC TAAAGCGCTG 
GCATTATTTA CGCAGGTTGA AAATGATGGT ACTAATTCGC GCTCAACGAT GCCGTTGAGT 
TGGATGTATT ATAACGGTTT AGGTACTGCA CCTGATTGTG ATAAAGCCTG GTCGTATTAC 
AAGAAAGCAT CTCGATATGT AGGTAAGAAA GTTGAGGAAA AAATATTTTT AAGTAAATGC 
GCAGCGGATA TTCAGAGTCG AAAAAACAAC GCGGATGCTT TACCTAAAGT AACCCTGAAA 
AAAGAGAGAA TTTTCTCTCG CGGGATAACG GCTAAACCGA AAGAATGCGC ACTAATTTTT 
CAGATTGGCA CAGATAAAAT TCGTAACATG GCGAATTTGC ATATTACGCT TGAACTGAAG 
AATGCTGATG GAATGGCAAC TGAGGAAACG TTGATGATTC CGCCATTCGG TTTGAATACT 
CTGGGGATAG ATATGCAAAA TCATGATGTT GATCCTCTCG TTACCCCATA CGATCTCCCG 
CTGTATACGC AAGATTTTTG TCACGGGATT GACGATATCC ATTTTACGCT GAAATCCGCT 
ACGGCAACGA TTAACGGTAA GAATGTCGAT TTACTGAAAG CTGATAGTGT GCGCTTTTTA 
GATAAAGAAT AA
 
Protein sequence
MEIKFLSLCI LAGVLFVSQV NASANNGKDD VKYAALTQKD LDALPVEKRA SVLDELGFIH 
EYGLNVPMNR EQALQYYKQA CELGGNYGCY NVKYAYQYGD GVAKDSAQAN KYAKKMNLDN 
LLIEQEYIDK FSQEIFTAKV LADTDKSQRP EFINALFNFL NNRPESDALF FSRIGFNQEK 
TFRLATLWVQ DGDPQMDYQL GLLTLNDFSG HYVDEPYKAR PASLKWFRAA AEKGVVEAQS 
LLGGIYSGGE GDEWGIKPDI QEAQKWYGQA AKQGDSDAQI ALGKIYYSGA TGRTDYAKAL 
ALFTQVENDG TNSRSTMPLS WMYYNGLGTA PDCDKAWSYY KKASRYVGKK VEEKIFLSKC 
AADIQSRKNN ADALPKVTLK KERIFSRGIT AKPKECALIF QIGTDKIRNM ANLHITLELK 
NADGMATEET LMIPPFGLNT LGIDMQNHDV DPLVTPYDLP LYTQDFCHGI DDIHFTLKSA 
TATINGKNVD LLKADSVRFL DKE