| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeAg_B4597 |
|---|
| Symbol | |
|---|
| ID | 6794556 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Agona str. SL483 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011149 |
|---|
| Strand | - |
|---|
| Start bp | 4495750 |
|---|
| End bp | 4498470 |
|---|
| Gene Length | 2721 bp |
|---|
| Protein Length | 906 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 642778673 |
|---|
| Product | sigma-54 factor, interaction domain-containing protein |
|---|
| Protein accession | YP_002149239 |
|---|
| Protein GI | 197249893 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG3933] Transcriptional antiterminator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.956591 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACAGAA AAGAGAAAAT ATTTCAGGCA GTTTGTGAGC TTTGTATCAC TTTTCCTAAT
GGATTGACAA CTGAGCAGAT TGCACTATAT ACAAATATTG CCAGGCCCAA TGTTAGTAAT
TATTTAAATC AATTTATTAA AGAGAATAAA ATAGTCAAAT CCGGCACTCG CCCAGTACTT
TACTCTATCA AAAAAGAAAA CCTTAAAACC ATTCATCAGA GTGCTAATCT GCCTGTGCCT
GATGTACAAA AAGAGCCTTT CCAGTATTTT CTGGGGTATA ACGGAAGTAT TAAAAAACAA
ATCAATCAGG CTAAAGCTGC TGTTATGTAT CCTCCGCATG GATTGCATAC GCTGTTAACG
GGGGACACTG GTGTAGGGAA AAGTCTTTTT GCCAGTCTGA TGTATAATTA CGCTGTTTAT
CAGAATGCGC TTGATAAAAA TTCACCGTTT ATCGTTTTTA ACTGTGCTGA TTATGCCAGT
AATCCGCAAT TATTGGTTTC TCATATCTTT GGCCATGTAA AAGGCGCTTT TACCGGTGCT
ACCAGAGATA AATTTGGCCT ACTCAGTGAA GCAGATGGTG GAATGTTATT TCTTGATGAA
GTTCATCGCT TGCCGCCTGA AGGGCAAGAA ATGATATTTT ATTTTATGGA TACAGGCACT
TATGGGTTGC TAGGGGAGAC ACAGCGTAGT CGTAAGGCAC AAATATTACT TATTTGCGCC
ACCACCGAAG AGCCTAATTC TACGCTGCTT TCCACTTTTC TGCGGCGTAT CCCAATCAAA
ATCAATATTC CTAATCTTGC CGAACGTTCA CCTGGCGATC AGGTCGATCT GTTAAAATAT
CTGCTGGAAA TCGAAGCCAG AAAAATCAAC TGCGCCATAA CTATTGATAC CGACAGTGCT
AAAGCAATCA TCGGCTCGTC TTTCTCTGGT AACGTGGGTA AATTAAAATC GACTATCCAG
TCCGTATGCG CCCACTTTTT TATCGAAGAT AATAATCCTA ACCAGCTTAA TATTACTTAC
GATAAACTCA TCTCTGATAT CAAAGTGGGA ATTTTTAATC TGGCGCGTGA CAACGATTAT
CTGGTTGGGT TGCAGCATGC ACTGGCTGGT ACTATCACGA TCATGCCTGA TAACTCACAT
TCGGGCCTGG ACTTATACAC AGATATTGAT GTAAATAAAC ATAATACTCC TTTTCAGGTC
TATGATGTTA TTGATAAGAA AATCCAATTC ATGCTGGAGC AAAAGTTTTC AGATACTGAT
ATAAATAATT ACATCACTTC TGAAATCAAC CAGTATATCG ACTTGAGTTT ACCCAAAAAG
CTTGAACATG TTGATCACGG TTTACCGAAT GCGACACTAG TCTTCTGTCA GTCGTTAAAA
AATGAATTAG AGCTTCAGTT GAATAAAGAG TTCAGCCATG GATTTCTGCT GTCTTTGGGG
TACCATTTGA ATAATATTAT ACAAAAAAGA ACCCGCTCAC GCACGAATAC CTGGATAAGA
CATTATCGCG TTGATAACCT TGAAGAATAT GAATCTGCGC TGACAATCAA AAAACGACTG
TATAAAGAAT TTGATATTGA TATTAATGAT GATGAAGTTG TCTATCTGAC CATTCTTTTG
GCCTCGCTGG TGGTTCGTGA ACGTGATAAG CATATCCACG TTATCGTTGC GACCCATGGC
GATATGATCG CCAGCAACAT GGTCGACATA GCAAAAATAT TAATTGCTGA AGATAATATA
TCAGCCGTCA ATATGCCGTT GGATATCCGC CCGAACCAGG CCATTGCGCA AATCAAGCAA
ACCATCACAG CTTACTCAAA TGCAAAAGGA TTTTTATTAT TAGTGGATAT GGGATCGCTC
ATCCAGGCGG GATATCTCTT ATCACAAGAG TGTAATGTCC CCGTCAGAAC TCTGGACATG
GTTTCTACTC CCTTAGTGAT TGAAGCACTT AGACGCTCGG CACTGCTGGA TGCCGATCTG
GATGACATTT ATTTGAGCCT GCAACATTTC AAAGGTTACG GCGTCAGTGA ACACAATGCG
GTAGTTACTG GCAATAAACC ATTGGCAGTA CTGGCTATTT GCTCTTCTGG CGAAGGGATT
GCCCGGAAAC TTAAAAATTT ATTAAGCTCA GTACTGGAAG AGATGAATCG TAAAGATATC
CATATCATTA ACCTGTCGGT TGAAGAGGTG CTCAATACGA AGCATAAAAT CACTACTGAA
TATCAGGTGT TGCTTTCAAT TGGCGTGATT AACCCCGGAC TGGATGTACC CTATATTTCA
CTGCCAGATT TCTTTTCACC AAAAGGTGAA TTGACATTCC AGACCATCAT CGGTGGGGCT
TTTCCGGTGA TGGTTGAAAA TAAAAACCCG GTAACGCTTA CTAAACTGGC TGAACAATAC
CTACAAGAGT TTTTAACTTA CCTGAATCCG AAAAAAATCG TGCCCATCGT CATGCTTTTT
CTGCAGCAGT TGAAAGAACA ACGTCACTTT GATGAATTCG GTTCCAATTT ACTCAATATG
ATTGTGCATA CCTGCGTTGC GATAGAGCGT TCGGTTCGTA ATGAAACCAT AACGTATAAC
AAACTTAATC GGGAAGCATA CTTGATGAGC GAATTATTTA AAATATATCA AAAGGCCAAT
GAGATACTGG AGGATAAACT TGATGTCAAA CTCAATGATG ACGAGCTACT TTTCATTATT
GATATGCTGG AAAAAGAGTA A
|
|---|
| Protein sequence | MNRKEKIFQA VCELCITFPN GLTTEQIALY TNIARPNVSN YLNQFIKENK IVKSGTRPVL
YSIKKENLKT IHQSANLPVP DVQKEPFQYF LGYNGSIKKQ INQAKAAVMY PPHGLHTLLT
GDTGVGKSLF ASLMYNYAVY QNALDKNSPF IVFNCADYAS NPQLLVSHIF GHVKGAFTGA
TRDKFGLLSE ADGGMLFLDE VHRLPPEGQE MIFYFMDTGT YGLLGETQRS RKAQILLICA
TTEEPNSTLL STFLRRIPIK INIPNLAERS PGDQVDLLKY LLEIEARKIN CAITIDTDSA
KAIIGSSFSG NVGKLKSTIQ SVCAHFFIED NNPNQLNITY DKLISDIKVG IFNLARDNDY
LVGLQHALAG TITIMPDNSH SGLDLYTDID VNKHNTPFQV YDVIDKKIQF MLEQKFSDTD
INNYITSEIN QYIDLSLPKK LEHVDHGLPN ATLVFCQSLK NELELQLNKE FSHGFLLSLG
YHLNNIIQKR TRSRTNTWIR HYRVDNLEEY ESALTIKKRL YKEFDIDIND DEVVYLTILL
ASLVVRERDK HIHVIVATHG DMIASNMVDI AKILIAEDNI SAVNMPLDIR PNQAIAQIKQ
TITAYSNAKG FLLLVDMGSL IQAGYLLSQE CNVPVRTLDM VSTPLVIEAL RRSALLDADL
DDIYLSLQHF KGYGVSEHNA VVTGNKPLAV LAICSSGEGI ARKLKNLLSS VLEEMNRKDI
HIINLSVEEV LNTKHKITTE YQVLLSIGVI NPGLDVPYIS LPDFFSPKGE LTFQTIIGGA
FPVMVENKNP VTLTKLAEQY LQEFLTYLNP KKIVPIVMLF LQQLKEQRHF DEFGSNLLNM
IVHTCVAIER SVRNETITYN KLNREAYLMS ELFKIYQKAN EILEDKLDVK LNDDELLFII
DMLEKE
|
|---|
| |