| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_3968 |
|---|
| Symbol | |
|---|
| ID | 6780832 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | - |
|---|
| Start bp | 4504704 |
|---|
| End bp | 4505210 |
|---|
| Gene Length | 507 bp |
|---|
| Protein Length | 168 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642769963 |
|---|
| Product | peptide deformylase |
|---|
| Protein accession | YP_002140756 |
|---|
| Protein GI | 197120329 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
|---|
| TIGRFAM ID | [TIGR00079] peptide deformylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00347079 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGTTC GAAATATAGT CACCTACCCG AACCAGATAT TGAAGACCCC TTGCCAGGTA
GTGGAACAAA TCGACGACTG GGTGCGCCAG CTGGTGGACG ACCTTGTGGA CACCATGCAT
GCCGGGCCGG GTTCCGTCGG CGTCGCCTCC CCCCAGATCG GCGTATCGCT GCGCGTTTGC
GTCATCGACG TCTCCAAGAA CCGTCACGGC AAGGACAACA ACCACGGGCT GCTGCTGATG
ATCAACCCGG AGATCCTGGC TCGAAGCGGC GCCGCAGTGA TGCGCGAGGG GTGCATGAGC
GTCCCCGATT ACACCGGCGA CGTCGAGCGC TCTACCGAGC TTACGCTTCG CTTCACCGAG
CCAGACGGCA CCGTCCGGGA GTTCGAGGCT TCCGGCTTCG AGGCGGTAGC CATACAGCAC
GAGTTGGACC ATCTGGACGG CCTGCTGTTC CTGGACCGCA TCGCCTCGCT GAAGACCGGC
CTTTTCCGTA GGAAGAGCTA CAAATAG
|
|---|
| Protein sequence | MAVRNIVTYP NQILKTPCQV VEQIDDWVRQ LVDDLVDTMH AGPGSVGVAS PQIGVSLRVC
VIDVSKNRHG KDNNHGLLLM INPEILARSG AAVMREGCMS VPDYTGDVER STELTLRFTE
PDGTVREFEA SGFEAVAIQH ELDHLDGLLF LDRIASLKTG LFRRKSYK
|
|---|
| |