| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_3508 |
|---|
| Symbol | |
|---|
| ID | 6780371 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | - |
|---|
| Start bp | 4020380 |
|---|
| End bp | 4021525 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642769503 |
|---|
| Product | oxygen-independent coproporphyrinogen III oxidase |
|---|
| Protein accession | YP_002140297 |
|---|
| Protein GI | 197119870 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
|---|
| TIGRFAM ID | [TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.230764 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTGCCG GACTGTACCT GCATTTCCCC TTTTGTCTGA AAAAGTGCCT CTACTGCGAC
TTCAACTCGA CTCCCGCTAC AGGCGACGAC CATCGGGAGT ACGTGGAGCT GCTGCTGAAA
GAGATGGCGC TCAGGCAGGC GGCGCTTCCC GAGCCGGTCA GCGCCCCGAC CCTTTACCTC
GGGGGGGGGA CCCCGTCGCT GATGGCGCCG GAACTGGTGG GGCTGATCGT CGCCGCGGCG
CGAGACAACT TCTCGCTGGA GCCTGACGCG GAGGTCACTC TGGAGGCGAA CCCGGGGACG
CTCACGCCCG AACGCCTGCA GGGGTACCGG ATGGCCGGGG TGAACCGCCT GTCGCTGGGG
ATCCAGTCCT TCGAGGACCG CCTTTTGCGG CGGCTGGGGC GCGTGCACAG CTCCGCCGAG
GCCCTATCCG CCTTCCAGGA TGCGCGCCGC GCCGGTTTCG ACAACATCAG CATTGACCTG
ATGCACTCCC TGCCGGGGCA GTCCCTTTCT CAGTGGCGCG AGGCGCTGGA GCTTGCCGTC
TCGCTCGATC CCGAGCACGT CTCCGCCTAC GCGCTCTCCA TAGAGGAGGG TACGCCGTTC
GAGCGGCTCC ACGAGGAGGG GGCGCTCGCG CTTCCATCCG AAGAAGAAGC CGCCGCGATG
TTCGAGGCGA CCTCGGACGT TCTCTCCGCC GCGGGGTACC GCCACTACGA GATCTCCAAC
TACGCGAAAC CCGGACGCCA TTCCCGCCAC AACTCCGCCT ACTGGAGCCG GGTAAGCTAT
CTAGGCTTCG GCGCCGGCGC ACATTCGTTT TGGAACCCGG ACGGGCTCGG GCGCCGCTGG
AAGAACCCCG GCGACGCGGC GGCGTACGCC GCGGGGATCC GGGCAGGGCT CCCCGTGGAC
GAGGAACCGG AGCAGCTGAC CCTGGAAGAC GCGCTTTCCG AATGCTTCTT TTTGGGCCTC
AGGATGCTCG ACGGGCTCGA CCTGGCTCCG CTTTCCGAGC GCTATGGGGA GAGCGCGCTG
GCGCCGCACC TTAAGCAGGT GGCGGCGCTG GAAAAAAAGG GCGCCCTCAC CAGGGAAGGG
AGCCGCATCA GCATATCCCC CGGCTCCGTC ATCCTCGCCA ACAGCATCTT CTCCAGCTTC
GTCTAA
|
|---|
| Protein sequence | MRAGLYLHFP FCLKKCLYCD FNSTPATGDD HREYVELLLK EMALRQAALP EPVSAPTLYL
GGGTPSLMAP ELVGLIVAAA RDNFSLEPDA EVTLEANPGT LTPERLQGYR MAGVNRLSLG
IQSFEDRLLR RLGRVHSSAE ALSAFQDARR AGFDNISIDL MHSLPGQSLS QWREALELAV
SLDPEHVSAY ALSIEEGTPF ERLHEEGALA LPSEEEAAAM FEATSDVLSA AGYRHYEISN
YAKPGRHSRH NSAYWSRVSY LGFGAGAHSF WNPDGLGRRW KNPGDAAAYA AGIRAGLPVD
EEPEQLTLED ALSECFFLGL RMLDGLDLAP LSERYGESAL APHLKQVAAL EKKGALTREG
SRISISPGSV ILANSIFSSF V
|
|---|
| |