Gene Gbem_3305 details

Gene Information

• Locus tag: Gbem_3305
• ID: 6780163
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacter bemidjiensis Bem
• Kingdom: Bacteria
• Replicon accession: NC_011146
• Strand: -
• Start bp: 3800714
• End bp: 3802678
• Gene Length: 1965 bp
• Protein Length: 654 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 642769297
• Product: Tetratricopeptide TPR_2 repeat protein
• Protein accession: YP_002140097
• Protein GI: 197119670
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG4235] Cytochrome c biogenesis factor

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAAGA GACGCAAGTT AGCAAAGCTT GAGCCGCAAG CCGGGCCACA GGCCTTGCCC 
GCGGTGGAGG AAGAGCTGAG CCTCTGGCGC GATCCGCTGG TTCATATCCT GCTGGTGCTG 
GCGCTGGGCT TCGCGGTCTA TTCGAACATC GTAGCCGCGC CGTTTGTCTT CGACGATCTC 
CCTTGCCTGG TCAACAACCC GGCCATCAAG GACTTCTCCT TCTTCGCCGA TCCGCAAAAG 
GTGTTCGCGC TCCCGGTCAA CCCGGACCTG AAGAACAACT TCATCCTGCG CCCGGTGGCT 
TACTTCACCT TTGCGCTCAA CCACGCCTTG CACGGGCTGG ACGTGCGGGG GTACCACGTC 
GTCAACCTCC TGCTGCACAT GGCCGACGCC CTGCTGGTGT ACCTCGTCTT GTGGCTCACC 
CTGAGGACGC CGGCGCTGCA GCCGGAGCAC GGTGAAGGGG CGGCACCCCC GGCGGAGAGA 
TACTTCTACC TCCCGTTTCT GGCGAGCCTT TTGTTCGTCT GCCACCCGCT GCAGACGCAG 
GCGGTCACCT ACGTGGTGCA GCGCTTCGTC CCGCTGGTCG CCTTTTTCTT CCTGGGGTCG 
TTGGCGCTGT GCGCCGCGGG AAGGCTCGCA AAGACGAAGC CGATGAGGGT CGCCTGCTAC 
CTCGGCTCGC TTTTCGCCTG CGTCCTAGCC ATGAAGAGCA AGGAAAACGC CTTCACCCTC 
CCGGCGGTGA TCGCGTTGTA CGAGTTCGTC TTCTTCCGGG GCGCCGTCAC CGCCGCCCGG 
CTCGTGCGGC TGGTCCCGTT CCTCTTCACC ATGGCGATCA TCCCGCTCAA GCTGATGTCA 
CTCTCGGCCA TGGCTGCCAA GGGGGGCAAG GTGGCCGGTG CGGTGAACCT GGTCAATTTC 
AACCACACCT CCCCCTGGGA ATACCTGATG ACGCAGTTCG GGGTGATAAC GACCTACTTG 
CGGCTCCTCA TCCTGCCGGT CAACCAGAAC TTCGACTATC AGTACCCGCT GCAGAAAGCT 
TTCCTCGCCC CGGCCGTCGT CCTGCCGTTG CTTTTGCTGC TGGCGCTGGC AGCCGGCGGC 
ACTTATCTCC TGGCGACCTC GCGCAGGGGA GACGACCGGG CCGGCATGCG CGCGCTGGCC 
GGCTTCGGCA TCTGGTGGTT TTTCATCACC CTCAGCGTCG AGTCGAGCGT GGTGCCGATC 
GACGACGTCA TCTTCGAGCA TCGGGCCTAC CTGCCGTCGG TCGGTTTCTT CATCGCCTTG 
CTCGCCGCCG CGTTCTCCCT TCCCCCCCGG TTCAGCGGGA CACCGCTTTG CACCTCGCGT 
CCCGCGGTCG CCGTGGTCGC CTTCCTGGTT CTCGCCAGCT CCGTCGCCTG CTACCTGCGA 
AACGAGGTGT GGACGACGCC GGTGGCCCTG TGGCGGGATA CGGTGCAGAA GAGCCCGGGG 
AAGGGGAGGG CGCACTTCTC ACTCGGGTTC GTGCTGGCCT GTGCCCTCCC CCCCTGGCAC 
ACCGATGACA TCAACGTGAT GCTCCAGCCC ATGGACCCCG CCCAGAACCA GGTACTGGAC 
GAAGCGGTCC GGGAACTCCG TATCTCGACC AAACTCGACC CCAAATCTGC TCCCGGATAT 
TCATTTCTGG GGGCGGCGCT GATGGTGCAA AAGAAGTTCG ACGAAGCTGC CGCCACATTG 
GCGACCGCAG CCGCGCTCGA CCCGAAGGAC GCAAGGACCC GCGCGTTTAT CGGGCAGCTC 
TGCGAGGCTC GGGGGGATCT TGCCGCTGCG CGTCTCAAGT ACCAGCAGGC AATCTCTCTC 
ACCCCTCAGG AGCCCTTCCC GCATCTGTTC CTGGCGCTTC TCTCCCTGCG AGAGGGAAAG 
CACGCCGAGG CGCTGCAGGA GTACCAGATC GCTAATAGGC TTGCCCCCCG CCCCGACCTG 
GAGCCGAAGA TGGCGCAGTT GAGATTCATG GTGGAGGGGC GATGA 

 

Protein sequence

MKKRRKLAKL EPQAGPQALP AVEEELSLWR DPLVHILLVL ALGFAVYSNI VAAPFVFDDL 
PCLVNNPAIK DFSFFADPQK VFALPVNPDL KNNFILRPVA YFTFALNHAL HGLDVRGYHV 
VNLLLHMADA LLVYLVLWLT LRTPALQPEH GEGAAPPAER YFYLPFLASL LFVCHPLQTQ 
AVTYVVQRFV PLVAFFFLGS LALCAAGRLA KTKPMRVACY LGSLFACVLA MKSKENAFTL 
PAVIALYEFV FFRGAVTAAR LVRLVPFLFT MAIIPLKLMS LSAMAAKGGK VAGAVNLVNF 
NHTSPWEYLM TQFGVITTYL RLLILPVNQN FDYQYPLQKA FLAPAVVLPL LLLLALAAGG 
TYLLATSRRG DDRAGMRALA GFGIWWFFIT LSVESSVVPI DDVIFEHRAY LPSVGFFIAL 
LAAAFSLPPR FSGTPLCTSR PAVAVVAFLV LASSVACYLR NEVWTTPVAL WRDTVQKSPG 
KGRAHFSLGF VLACALPPWH TDDINVMLQP MDPAQNQVLD EAVRELRIST KLDPKSAPGY 
SFLGAALMVQ KKFDEAAATL ATAAALDPKD ARTRAFIGQL CEARGDLAAA RLKYQQAISL 
TPQEPFPHLF LALLSLREGK HAEALQEYQI ANRLAPRPDL EPKMAQLRFM VEGR