| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_2648 |
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| Symbol | |
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| ID | 6782645 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter bemidjiensis Bem |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011146 |
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| Strand | + |
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| Start bp | 3065769 |
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| End bp | 3069032 |
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| Gene Length | 3264 bp |
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| Protein Length | 1087 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642768643 |
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| Product | putative phytochrome sensor protein |
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| Protein accession | YP_002139452 |
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| Protein GI | 197119025 |
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| COG category | [E] Amino acid transport and metabolism
[K] Transcription
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG0591] Na+/proline symporter
[COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCGATG TGAACTGGGT CTGGGGCACG GCGCTCCTTT ATATCGTCAT CCTGTTCCTG
GTCGCCTACT ATGCCGACCA GAGGCAACGG GAGGGGAGGA GCATCACGGC GAATCCCGTC
GTGTACGCCC TCTCCATAGC CGTCTACTCC ACCTCATGGA CCTTCTACGG CAGCGTCGGC
AAGGCCGCGA CCACGGGCAT CGACTTTCTC CCCATCTACC TTGGCCCCAC GCTCACCGCT
TTCACCTGGT GGTTCCTGCT CAAGAAGATC GTCAGGATCT CCAAGGAAAA CAACATCACC
TCCATAGCCG ACTTCATCAG CTCCCGATAC GGCAGCTCGC AGTGGTTGGG AGCCATGATC
ACGGTGATCA CCCTGATGGG GATCATGCCG TACATAGCCC TTCAGTTGAA GGCCGTCTCC
ACAGCTTTCA CCATCATCAC CGGTTATCAC GACTTCCACG TCGGCGTCAT GGAAAGGGTC
TACACCCCCT CTCCCCACCC CGGGCTCTTC ACGTCGGCCC TTCTGGCCCT GTTCAGCGTG
GTCTTCGGGG CCAAGCACCT TGCCTCGACC GAGCGCCACG ACGGGCTGGT GGCCGCCATC
GCGCTGGAGT CCCTGGTAAA GCTCGTGGCG ATGCTCGTGG TCGGCATCAC CATCACCTAC
TTCGTCTTCG ACGGCATGGG GGACATCTTC ACCCGCATGT ACGGTAAAGA CCCGGCCCTG
CTCACCCGGC TCGTCACGCT GGGGGGGACC GGCGAAAACT CCTACTCCTC CATGTTCAGC
CTGCTCACCC TCTCCATGAG CGCGGTGATG CTGCTGCCGC GCCAGTTCCA GGTGATGGTG
CTGGAGAACG CCGACGAAAC GCACCTGAAC GCTGCTTCGT GGCGCTTCCC CGCCTATATG
TTCCTGATGA ACCTGTTCGT GATGCCCATC GCGCTCGCCG GGGTGCTTTT GACCGGCTCC
AACGTGGGGG CCGACTTCTT CGTGCTCACC CTACCCATGC AGCAGGGGTA CCCGTGGCTC
GCCCTGCTCG CTTTCCTCGG GGGCTTCTCC GCCTCCGCCG GCATGGTTAT GGTGGAGTCC
ATTGCGGTCT CGACCATGCT GCTGAACCAC GTGCTGATGC CGGTCGTGAT CAGGTTCAAG
CCGCAGTGGT GGTTCCCCAA GCTCCTCATC AACCTCAAGC GCTTCGGCAT CGTACTGGTC
ATCCTTTTGG GCTACCTGTA CCAAAGCGTG GTGGGAGAGA GCTACATGCT CGCCAACATG
GGGCTCATCT CCTTCTCCGC AGCGGTCCAG TTCGCCCCGG CGCTGATAGG TGGGCTGTAC
TGGCCCCGGG GGAACAAGAC CGGGGCGATA GCGGGTCTTT CCTGCGGGTT TGCCGTCTGG
TTCTACACGC TGCTGCTCCC CTCCCTGCTG CAGGCCGGAG GATGGCAGGA CGACCTCCTT
TTGCAGGGCC CGTTCGGCAT CGAGTTCCTC AAGCCGCAGG CGCTTTTCTG GCTGACCGGG
CTCGACCCCT ACAGCCATAC GCTCTTCTGG AGCATGTTCA TGAACATCCT CGCCTACCTC
TCCCTCTCCA TCCTCCTGGG ACAGGGCGAG AAGGAAAGCG AACAGATGAA CCGCTTCGTC
CGGGTCTTCT CCCCGGAGAA CCTGGAGCCG CAGTGGGAAA CCAAGCGCCT TTCCAAACCG
GTCACCATCG TGCAGTTCGT GAACCTCATG TCCAAGTTCA TCGGGGAGCA GCAGGCGCAT
ACCGCCATCA CCGACTACCT GGGGAACCGG GAGATAGACA GCAAGGGCGG GGTCTCCGAG
TTCGAGCTCC CCAACCTGAA GCGCTTCGTG GAGAAGACGC TGGCGGGCTC TTTGGGTGGC
GCCGCCGCGG GCGCCGTGGT GGAAAGCTTC CTCTCCGACA TAGGCTCCCG GATGGAGCCG
GTCTTCGACA TCTTTTCCAC CGTGCGCACC TCAAGGGATC AAAGCCGCGA GGCGCTCTCG
GTGCGCCTGC GGGCCTCGGA GATCATGAAC CGCTCGCTGG AGCTCGACAT CATCATGGGG
GACCTGCTCG AGCTGATACT GCGGGAGTTC AAGCTCGACC TCTGCGTCAT CAGGCTCTTG
AACGACGAAG GGATGCTGGA GGTGCGCTGC CACCGCGGCT ATGGCGGGGA GCGCATCATC
AGCGAAGGAA GGACGCTGGA GATCGACACC CACGTAGGGG AGGCCTTCCT GGGGAGGCGG
ACGGAATTCG TGAACGACAC GGCCTTTCTC ACCAAGGCCA TCGCCAAGGA GATCGCCAAC
AGGGAAGGGA TCCGCTCCTT CGCCCACATC CCCATCGCCA GCGCCGGAGC CCCCCCGGTC
GGCGTCCTCT CGGTCTTCTC CAGATCCATC GTCGGGCTTT TCACCGAGCA GTTCGTGGAG
CTCTTGGAGA GCCTCGCCGG GCAGCTAGCC CAGGCGGTGA ACATAGTCGA AGAGCGCGAG
GCGAGAGAGC GCGAAAGGCG GCAAAAGGAG GCGGCGCTCC TGGAAAACGC GCGGGTGACC
CGCGACCTCG AGATCGCCAA GCAGATCCAG CTCTCGCTCC TTCCCGAGTC CGCCCCGCGC
CTCAAAGGGC TCAGCATCGC CAGCCGCTGC ATCCCGGCGG CGCACGTCGG GGGAGACTAC
TACGACTTCT TCGAAAGGGG CGAAGGGCGG GTCGACGTCA TCATGGCGGA CGTCTCCGGC
CACAGCGTAG GCGCCGCCTT GATCATGGTA GAGACCAGGA GCGTGCTCCG GGCCCAGATG
AAGGAAACCC ACTCCGCCAA AGACGTGCTT AGGCTTTTGA ACGAGCTCCT CTACGACGAC
CTGAGCGGCG CCGAACTCTT CATCACCATG TTCTGCGCCA AGTACGACGG GACCACCCGC
ACGCTCTCCT ACGCGAACGC AGGGCACAGC CGCCCCATCC TCTTCCGTGC CGGCGGGTGG
GAGGAACTAG ACGCAGAAGG GCTGATCCTG GGGGTCGAGC AGTCGGTCGC GTTCGAGGAG
AAAAAGGTGA CCTTGGAGGC GGGGGACCTG CTCCTCATCT ATACCGACGG GATCATCGAG
GCGGAGCACG AAACGGGCGA GCTTTTCGGA GTCGAGAGAC TGTGCCGACT GGTCTCTGGA
CTGGCCGACC AGGAACCGGA AACGGTGATC GAGCGGGTCC TTTCAGAGGT CAATACTTAC
TCATGGCCCC ATCCTTTACA GGATGACATT TCCATGGTAG TCATGAAGGT GTTAAAAAAT
GAGACAGAGA CCGCCTCTTG CTAA
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| Protein sequence | MLDVNWVWGT ALLYIVILFL VAYYADQRQR EGRSITANPV VYALSIAVYS TSWTFYGSVG
KAATTGIDFL PIYLGPTLTA FTWWFLLKKI VRISKENNIT SIADFISSRY GSSQWLGAMI
TVITLMGIMP YIALQLKAVS TAFTIITGYH DFHVGVMERV YTPSPHPGLF TSALLALFSV
VFGAKHLAST ERHDGLVAAI ALESLVKLVA MLVVGITITY FVFDGMGDIF TRMYGKDPAL
LTRLVTLGGT GENSYSSMFS LLTLSMSAVM LLPRQFQVMV LENADETHLN AASWRFPAYM
FLMNLFVMPI ALAGVLLTGS NVGADFFVLT LPMQQGYPWL ALLAFLGGFS ASAGMVMVES
IAVSTMLLNH VLMPVVIRFK PQWWFPKLLI NLKRFGIVLV ILLGYLYQSV VGESYMLANM
GLISFSAAVQ FAPALIGGLY WPRGNKTGAI AGLSCGFAVW FYTLLLPSLL QAGGWQDDLL
LQGPFGIEFL KPQALFWLTG LDPYSHTLFW SMFMNILAYL SLSILLGQGE KESEQMNRFV
RVFSPENLEP QWETKRLSKP VTIVQFVNLM SKFIGEQQAH TAITDYLGNR EIDSKGGVSE
FELPNLKRFV EKTLAGSLGG AAAGAVVESF LSDIGSRMEP VFDIFSTVRT SRDQSREALS
VRLRASEIMN RSLELDIIMG DLLELILREF KLDLCVIRLL NDEGMLEVRC HRGYGGERII
SEGRTLEIDT HVGEAFLGRR TEFVNDTAFL TKAIAKEIAN REGIRSFAHI PIASAGAPPV
GVLSVFSRSI VGLFTEQFVE LLESLAGQLA QAVNIVEERE ARERERRQKE AALLENARVT
RDLEIAKQIQ LSLLPESAPR LKGLSIASRC IPAAHVGGDY YDFFERGEGR VDVIMADVSG
HSVGAALIMV ETRSVLRAQM KETHSAKDVL RLLNELLYDD LSGAELFITM FCAKYDGTTR
TLSYANAGHS RPILFRAGGW EELDAEGLIL GVEQSVAFEE KKVTLEAGDL LLIYTDGIIE
AEHETGELFG VERLCRLVSG LADQEPETVI ERVLSEVNTY SWPHPLQDDI SMVVMKVLKN
ETETASC
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