Gene Gbem_2394 details

Gene Information

• Locus tag: Gbem_2394
• ID: 6782392
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacter bemidjiensis Bem
• Kingdom: Bacteria
• Replicon accession: NC_011146
• Strand: +
• Start bp: 2773750
• End bp: 2775678
• Gene Length: 1929 bp
• Protein Length: 642 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 642768391
• Product: putative PAS/PAC sensor protein
• Protein accession: YP_002139200
• Protein GI: 197118773
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG2208] Serine phosphatase RsbU, regulator of sigma subunit
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.0339768
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGAAAAC CGCTTCGCGT GCTGATAGTG GAAGACTCGG AGGACGACGC ACTGTTGCTT 
GTCTTCGAGC TGCGTCGCGG CAACTATGCT CCGGTGACCA AGCGCGTGGA GAACTCCGAC 
TCGTTGCGCC ATGCGCTCAA GGAGGACACC TGGGACCTAG TCATCTCCGA CTACGTCCTT 
CCCGGATTCT CGGGGCTAGA CGCGCTGAAG CTGGTGCGGG CCTCGGGGCT GGACCTTCCC 
TTCATCATCG TTTCCGGAAA AATCGGCGAG GAAGATGCCG TAAAGGCCAT GAAGGAGGGG 
GCGAACGATT ATCTGATCAA GGGAAACACC TCGCGCCTTA TCCCTGCCAT CGAGCGGGAG 
ATGCAGGAGG CCGAGGTTAG GCGCAAGCGG CGCGAGGCCG AGTCGGCGCT GGTGAGAAGC 
GAGCGGCGCT ACAAGCGGCT GGTGTCGGCG GTCACCGACT ATATCTACAC CGTAACTATT 
CAGAAAGGGG GCGTGGTGAA GACCTCGCAT GGCCCCGGAT GCCTCTCGGT GACCGGCTAC 
AGCCACGAGG AGTACGTCGA CAACCCGTTT TTGTGGTACC AGATGATCTA CGAGGAGGAC 
CGGGGCGCGG TGACGAGCCT CACCGAGGAC CTGCGGGCCG GAATAGACAT CCCCTCGCTG 
GAGCACCGGA TACGGCACAA GGACGGCTCC CTGCGCTGGG TCATCAACAC CATAGTCCCA 
CGCTACAGCG AACAGGGCGA ACTGATCGCC TACGACGGCC TCATCTCGGA CATCTCGGAG 
CGAAAACGCG CCGAAGAGTC GCTGCAGCTG CAAAGCGCGG CGCTGGAGGC GGCGGCCAAC 
GCCATAGTCA TCACCGACAG CAGCGGGGTC ATCATCTCGG TAAACCAGGC CTTCACCAGG 
ATGACCGGGT ACAGCCGCGA GGAGGCCCTC GGTCGCGATC TGAGTTTTCT GAAATCGGAG 
CGGCACAATT CGGAGTTTTA CAGAGGCCTC AGGGAAACCA TCAGCGCCGG CGAGGTCTGG 
CACGGAGAGA TGATCAACCG GCGCAAGGAC GGCACCCTCT ACCCCGAGGA GCAGACCATC 
ACGCCGGTCC TGGACGAAGA CGGGCACATC ATCCACTTCA TCTGCATCAA GCAGGACATC 
ACCGAGCGCA AGCAGGCCGA GCAGGCGCTG ATGCAAAACG CCAGCATGCT GAAGGAAATG 
GAGATTGCGA AGCAGATCCA GAGTTCTTTG CTTCCGGTCG CCCCCCCCTG CCTCCCGGGC 
ATCGACTGCG CCGGGAGCTG CTTCCCCGCC AACGACATCG GCGGCGACTA CTACGACATC 
CTCCCGCACG GAGAAGAACT CGACCTCGTC ATCGCCGACG TCTCCGGCCA CAGCGTCGGA 
GCCGCGCTGA TCATGGTCGA AACCCGCAGC GTTCTGCGCG CGCAGCTTGC GACCTTGAAG 
GGGCCGGCCC AGATCGTGTC GGCCCTGAAC GAACTGCTGC ACGAGGACCT GAGCCGGGCC 
GAACTCTTCA TCACCATGTC GTATCTGAGT TACCACATAC CCACCGGGAC ACTCCGCTAC 
ACCAACGCCG GCCATCCTCC TCCCCTGCTC TACCGGCATC AAACCGACCG GTTCTTCGAG 
CTGGACGCCG AAGGGCTCAT CCTGGGGGTA CACAGGCAGG TCGCCTTCCA GGAGCCCTCG 
CTCCAGGTCC AGGACGGAGA CCTGTTGCTG CTGTTCACCG ACGGTATCAC CGAGGCCGAA 
AGCCCGGAAG GCGAGTTCTT CGGCATGGAT AGATTGCGGC AGGTAGTGGC GCGCGAGCAC 
AGTAAACCGG CAGCGGGAGT GATCGCCGCA GTCATGGAAT CAGTCAGGGC CTTCACCGGC 
TGCGATACCT TCAACGACGA CATCTCGATG CTTCTTCTCA AGTTCGGCAC CGTAACCCCC 
CATTCTTAG 

 

Protein sequence

MGKPLRVLIV EDSEDDALLL VFELRRGNYA PVTKRVENSD SLRHALKEDT WDLVISDYVL 
PGFSGLDALK LVRASGLDLP FIIVSGKIGE EDAVKAMKEG ANDYLIKGNT SRLIPAIERE 
MQEAEVRRKR REAESALVRS ERRYKRLVSA VTDYIYTVTI QKGGVVKTSH GPGCLSVTGY 
SHEEYVDNPF LWYQMIYEED RGAVTSLTED LRAGIDIPSL EHRIRHKDGS LRWVINTIVP 
RYSEQGELIA YDGLISDISE RKRAEESLQL QSAALEAAAN AIVITDSSGV IISVNQAFTR 
MTGYSREEAL GRDLSFLKSE RHNSEFYRGL RETISAGEVW HGEMINRRKD GTLYPEEQTI 
TPVLDEDGHI IHFICIKQDI TERKQAEQAL MQNASMLKEM EIAKQIQSSL LPVAPPCLPG 
IDCAGSCFPA NDIGGDYYDI LPHGEELDLV IADVSGHSVG AALIMVETRS VLRAQLATLK 
GPAQIVSALN ELLHEDLSRA ELFITMSYLS YHIPTGTLRY TNAGHPPPLL YRHQTDRFFE 
LDAEGLILGV HRQVAFQEPS LQVQDGDLLL LFTDGITEAE SPEGEFFGMD RLRQVVAREH 
SKPAAGVIAA VMESVRAFTG CDTFNDDISM LLLKFGTVTP HS