Gene Gbem_2394 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGbem_2394 
Symbol 
ID6782392 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter bemidjiensis Bem 
KingdomBacteria 
Replicon accessionNC_011146 
Strand
Start bp2773750 
End bp2775678 
Gene Length1929 bp 
Protein Length642 aa 
Translation table11 
GC content62% 
IMG OID642768391 
Productputative PAS/PAC sensor protein 
Protein accessionYP_002139200 
Protein GI197118773 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2208] Serine phosphatase RsbU, regulator of sigma subunit 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0339768 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGAAAAC CGCTTCGCGT GCTGATAGTG GAAGACTCGG AGGACGACGC ACTGTTGCTT 
GTCTTCGAGC TGCGTCGCGG CAACTATGCT CCGGTGACCA AGCGCGTGGA GAACTCCGAC
TCGTTGCGCC ATGCGCTCAA GGAGGACACC TGGGACCTAG TCATCTCCGA CTACGTCCTT
CCCGGATTCT CGGGGCTAGA CGCGCTGAAG CTGGTGCGGG CCTCGGGGCT GGACCTTCCC
TTCATCATCG TTTCCGGAAA AATCGGCGAG GAAGATGCCG TAAAGGCCAT GAAGGAGGGG
GCGAACGATT ATCTGATCAA GGGAAACACC TCGCGCCTTA TCCCTGCCAT CGAGCGGGAG
ATGCAGGAGG CCGAGGTTAG GCGCAAGCGG CGCGAGGCCG AGTCGGCGCT GGTGAGAAGC
GAGCGGCGCT ACAAGCGGCT GGTGTCGGCG GTCACCGACT ATATCTACAC CGTAACTATT
CAGAAAGGGG GCGTGGTGAA GACCTCGCAT GGCCCCGGAT GCCTCTCGGT GACCGGCTAC
AGCCACGAGG AGTACGTCGA CAACCCGTTT TTGTGGTACC AGATGATCTA CGAGGAGGAC
CGGGGCGCGG TGACGAGCCT CACCGAGGAC CTGCGGGCCG GAATAGACAT CCCCTCGCTG
GAGCACCGGA TACGGCACAA GGACGGCTCC CTGCGCTGGG TCATCAACAC CATAGTCCCA
CGCTACAGCG AACAGGGCGA ACTGATCGCC TACGACGGCC TCATCTCGGA CATCTCGGAG
CGAAAACGCG CCGAAGAGTC GCTGCAGCTG CAAAGCGCGG CGCTGGAGGC GGCGGCCAAC
GCCATAGTCA TCACCGACAG CAGCGGGGTC ATCATCTCGG TAAACCAGGC CTTCACCAGG
ATGACCGGGT ACAGCCGCGA GGAGGCCCTC GGTCGCGATC TGAGTTTTCT GAAATCGGAG
CGGCACAATT CGGAGTTTTA CAGAGGCCTC AGGGAAACCA TCAGCGCCGG CGAGGTCTGG
CACGGAGAGA TGATCAACCG GCGCAAGGAC GGCACCCTCT ACCCCGAGGA GCAGACCATC
ACGCCGGTCC TGGACGAAGA CGGGCACATC ATCCACTTCA TCTGCATCAA GCAGGACATC
ACCGAGCGCA AGCAGGCCGA GCAGGCGCTG ATGCAAAACG CCAGCATGCT GAAGGAAATG
GAGATTGCGA AGCAGATCCA GAGTTCTTTG CTTCCGGTCG CCCCCCCCTG CCTCCCGGGC
ATCGACTGCG CCGGGAGCTG CTTCCCCGCC AACGACATCG GCGGCGACTA CTACGACATC
CTCCCGCACG GAGAAGAACT CGACCTCGTC ATCGCCGACG TCTCCGGCCA CAGCGTCGGA
GCCGCGCTGA TCATGGTCGA AACCCGCAGC GTTCTGCGCG CGCAGCTTGC GACCTTGAAG
GGGCCGGCCC AGATCGTGTC GGCCCTGAAC GAACTGCTGC ACGAGGACCT GAGCCGGGCC
GAACTCTTCA TCACCATGTC GTATCTGAGT TACCACATAC CCACCGGGAC ACTCCGCTAC
ACCAACGCCG GCCATCCTCC TCCCCTGCTC TACCGGCATC AAACCGACCG GTTCTTCGAG
CTGGACGCCG AAGGGCTCAT CCTGGGGGTA CACAGGCAGG TCGCCTTCCA GGAGCCCTCG
CTCCAGGTCC AGGACGGAGA CCTGTTGCTG CTGTTCACCG ACGGTATCAC CGAGGCCGAA
AGCCCGGAAG GCGAGTTCTT CGGCATGGAT AGATTGCGGC AGGTAGTGGC GCGCGAGCAC
AGTAAACCGG CAGCGGGAGT GATCGCCGCA GTCATGGAAT CAGTCAGGGC CTTCACCGGC
TGCGATACCT TCAACGACGA CATCTCGATG CTTCTTCTCA AGTTCGGCAC CGTAACCCCC
CATTCTTAG
 
Protein sequence
MGKPLRVLIV EDSEDDALLL VFELRRGNYA PVTKRVENSD SLRHALKEDT WDLVISDYVL 
PGFSGLDALK LVRASGLDLP FIIVSGKIGE EDAVKAMKEG ANDYLIKGNT SRLIPAIERE
MQEAEVRRKR REAESALVRS ERRYKRLVSA VTDYIYTVTI QKGGVVKTSH GPGCLSVTGY
SHEEYVDNPF LWYQMIYEED RGAVTSLTED LRAGIDIPSL EHRIRHKDGS LRWVINTIVP
RYSEQGELIA YDGLISDISE RKRAEESLQL QSAALEAAAN AIVITDSSGV IISVNQAFTR
MTGYSREEAL GRDLSFLKSE RHNSEFYRGL RETISAGEVW HGEMINRRKD GTLYPEEQTI
TPVLDEDGHI IHFICIKQDI TERKQAEQAL MQNASMLKEM EIAKQIQSSL LPVAPPCLPG
IDCAGSCFPA NDIGGDYYDI LPHGEELDLV IADVSGHSVG AALIMVETRS VLRAQLATLK
GPAQIVSALN ELLHEDLSRA ELFITMSYLS YHIPTGTLRY TNAGHPPPLL YRHQTDRFFE
LDAEGLILGV HRQVAFQEPS LQVQDGDLLL LFTDGITEAE SPEGEFFGMD RLRQVVAREH
SKPAAGVIAA VMESVRAFTG CDTFNDDISM LLLKFGTVTP HS