| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_2058 |
|---|
| Symbol | |
|---|
| ID | 6782052 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | + |
|---|
| Start bp | 2370917 |
|---|
| End bp | 2372233 |
|---|
| Gene Length | 1317 bp |
|---|
| Protein Length | 438 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642768053 |
|---|
| Product | RNA methyltransferase, TrmA family |
|---|
| Protein accession | YP_002138867 |
|---|
| Protein GI | 197118440 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
|---|
| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCTGAGG CGGTTGTCGA AATCGAGAGG CTATGCTACG GCGGCGCGGG CTTTGGCCGC
ATCGACGGCA AGGCCTGCTT CGTTCCGCTC ACCGCGCCGG GCGACAAGGC CCGGGTCCGG
GTGGTCAAGG AGAAGCGCTC CTTCGCCGAG GCCGAGGTGG TCGAGCTCTT GGAGCCTTCG
CCGCTGCGCA CCGACCCCGC CTGTCCCTAT TTCGGGGTCT GCGGCGGATG CGATTGGCAG
CATCTTCCCT ATGCCGAGCA GTTGAAGCAA AAAGGGGAGA TCTTCGCCGA CACGCTGGCG
CGCATCGGGA AGGTGCCGCG CGAGCTGGTT TTGCCGGTTT CCCCCTCGCC TGAGTGCTTC
GGTTACCGCT CGCGCATCCA GCTCAAAGTC GCCCGTAAAG GCGGCATCCC GACGCTGGGG
TTTTTCAAGC GCGGCTCGCA CGACGTGGTC GATCTCGCCG CGGGGTGCGC CCTGGCTGCG
CCACTTTTGA ACCAGGCGCT GGCCGAGGTC AGGGGGATTT TGCCGAGGCT GCCGCAGCTT
GAGGGGATAA CCCAGGTGGA TCTCGCCATG GGCGACGACG GGGAGTCCAT CGCGGTCTTC
CACTACCGCG GGAAAGACGC CGCCTCTCTT TTGGATTGCC TTCTTGCCGC CCGACCTGAG
CTTCCTTCTG TAACTGGTGC TTACGTGAAG ACCGGGGAGA AGGGGGAAAT GAGCGCCGTC
TTCGGCGTCG ACTCCCTGAG CTACGGGGTT CCCGCCGGGC TCTTCCCCGG GTCGCGCGAG
GTGCGGCTTC GCTTCAGCCG CGGTGGGTTC TCCCAGGTCA ACTATCGTCA GAACCTGGAG
CTGATCAAGA CGGTGGGGGA GTGGGGCGCG CTGCGGGAAG GAGCCCGGGT GCTCGACCTT
TACTGCGGCA ACGGCAACAT CTCGGTTCCC ATCGCGCCTT TGGTCGGCGA AGTGGTCGGG
GTGGAAGGGT ACGCTCCCTC GATCGTCGAC GCCGCGGCCA ACGCCGAGGC AAACGGCGCC
CTCAACGCAA GATACCTCGT GGGTGACGCG GCGCTTTCGG TGCGGCGGCT GGCAAAGCGC
AAGGAAAAGT TCGACCTGGT CGTCCTCGAC CCGCCGCGCG CCGGCGCCGA AGCTGCCGGG
GAGCTGGCTA TTTTGGCGCC GGAAAGAATC CTCTATGTAT CCTGCGACCC CGCCACCCTG
GCGCGCGACC TGGGCCAGCT TTGCGGGGCC GGGTACCGGG TCGCCCGCTC CAAGCCGGTG
GACATGTTCC CGCAGACCTA CCACCTGGAG AGCGTGACCG AACTGATTCG GGATTGA
|
|---|
| Protein sequence | MAEAVVEIER LCYGGAGFGR IDGKACFVPL TAPGDKARVR VVKEKRSFAE AEVVELLEPS
PLRTDPACPY FGVCGGCDWQ HLPYAEQLKQ KGEIFADTLA RIGKVPRELV LPVSPSPECF
GYRSRIQLKV ARKGGIPTLG FFKRGSHDVV DLAAGCALAA PLLNQALAEV RGILPRLPQL
EGITQVDLAM GDDGESIAVF HYRGKDAASL LDCLLAARPE LPSVTGAYVK TGEKGEMSAV
FGVDSLSYGV PAGLFPGSRE VRLRFSRGGF SQVNYRQNLE LIKTVGEWGA LREGARVLDL
YCGNGNISVP IAPLVGEVVG VEGYAPSIVD AAANAEANGA LNARYLVGDA ALSVRRLAKR
KEKFDLVVLD PPRAGAEAAG ELAILAPERI LYVSCDPATL ARDLGQLCGA GYRVARSKPV
DMFPQTYHLE SVTELIRD
|
|---|
| |