| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_1940 |
|---|
| Symbol | |
|---|
| ID | 6781930 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | + |
|---|
| Start bp | 2241568 |
|---|
| End bp | 2242854 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642767932 |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_002138750 |
|---|
| Protein GI | 197118323 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGCAAGA AAGCAAAGAT CGTTGGATTA ATTTTGGCCC TCGCCCTGAC GGGAGCCTTT
ACCTATCGTT TCGTCCAGAT GGGCGCCGCC GGTTCGGAAC CAGGCGAGCA TGCCGGCGAG
GCCGGGCATA CCGAAGCAAA GCATGAGGAA GAGGGGCACG CCAAGGAGGA AAAGGGGCAC
GAGGAAGAGC ATGCCGGAGT AGCGGGGCAT GACGAACACG GAGCTGCCGG CAGCGTGACC
ATGAAACCCG AGATCCAGAA GCAAAACGGC GTGGTGCTGG CGGCCGCGAA GCCGCTGCGG
CTGGCGGGAG TGATACGGGC GACCGGCAAG GTCGAGGTGA ACGCGGACCG GATCGCTCAC
GTGGCGCCCC GCATCCCGGG GAAGGTGGTT TCGGTGCGGG CTTCCCTCGG CGACAGCGTG
TCGGCGGGGC AGTCCCTGGC GACCCTCGAC AGCGTCGAGG TCGGGGAAGC GATCGGCCGC
TACCGCCAGG CGAAGACCAG GCTCGCCCTG GCGCAGGGAA ACATGGACCG GGTCAAGGCG
CTTGTGGATA GGAAGATCGC GGCGAGAAAG GACATACTCC AGGCCGAGAC CGACTATAAG
ACGGCGCAGA CCGAGCTCGC CACCGACGAG GAGCGCCTCT CCCTGTACGG GGTATCCGTC
GCAGAGGTAA GGGGAGGCGC CCGGAAGCCG CTATTGCCGG TCCGCTCCCC AATCGGCGGG
ATCGTCACCG AGAAACACGC CATCGTCGGC GAGCTTGCCG ACCCATCCAA GAGCCTCTAC
ACGGTCGCGG ACCTCTCCTC GGTCTGGGTG CTGGTGGATA TAAACGAAAA GGACCTGGCG
AAGGTCCACA AAGGGCAGGG GGCTGTGGTC ACCGTCGGGG CCTTCCCCGA CCTGAAGCTC
AAGGGGCGCA TCACCTACAT CGCCGACCTC GTGGACGAGT CGACCCGCAC GGTGAAGGCG
CGGGTAGAAG TGACGAACCC CGGCCGGAAG CTGAAACCCG AGATGTTCGC CACGGCGGAA
CTTGCCCTGG CGGCAGACGC CCCCCCGGTA CTCGCGGTCC CGGAAGACGC TGTCCAGGAT
CTGGACGGCA AGAAGGTGGT CTTCGTCGCC GAAGAGGGGA ACCGGTTCGA GGCGCGCCTG
GTGCAGTTGG GAAGGAGCGC CGCGGGGCTC GTGGAGATCG CCTCCGGCCT GAAAGAGGGG
GAGAACTACG CCGCCAAGGG GGCCTTCATC CTCAAGTCGG AAGTGAAAAA AGGGGAAGTG
GTCGACGAAC ACGGCCACGG GAAATGA
|
|---|
| Protein sequence | MSKKAKIVGL ILALALTGAF TYRFVQMGAA GSEPGEHAGE AGHTEAKHEE EGHAKEEKGH
EEEHAGVAGH DEHGAAGSVT MKPEIQKQNG VVLAAAKPLR LAGVIRATGK VEVNADRIAH
VAPRIPGKVV SVRASLGDSV SAGQSLATLD SVEVGEAIGR YRQAKTRLAL AQGNMDRVKA
LVDRKIAARK DILQAETDYK TAQTELATDE ERLSLYGVSV AEVRGGARKP LLPVRSPIGG
IVTEKHAIVG ELADPSKSLY TVADLSSVWV LVDINEKDLA KVHKGQGAVV TVGAFPDLKL
KGRITYIADL VDESTRTVKA RVEVTNPGRK LKPEMFATAE LALAADAPPV LAVPEDAVQD
LDGKKVVFVA EEGNRFEARL VQLGRSAAGL VEIASGLKEG ENYAAKGAFI LKSEVKKGEV
VDEHGHGK
|
|---|
| |