| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_1643 |
|---|
| Symbol | |
|---|
| ID | 6781631 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | - |
|---|
| Start bp | 1907730 |
|---|
| End bp | 1909019 |
|---|
| Gene Length | 1290 bp |
|---|
| Protein Length | 429 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642767637 |
|---|
| Product | MiaB-like tRNA modifying enzyme |
|---|
| Protein accession | YP_002138457 |
|---|
| Protein GI | 197118030 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0621] 2-methylthioadenine synthetase |
|---|
| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01579] MiaB-like tRNA modifying enzyme |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.119605 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAGA CCATCGCCAT AACCACCCTC GGTTGCAAGA TCAACCAGTT CGAATCGGCC
GCCATGACCC AGGCGCTGGA GCAAAACGGC TACAGCATGG TCCCCTTCTC GGATAAGGCC
GACATCTACG TCATCAACAG CTGCACCGTG ACGGCGAAGA CCGACGCGGA ATCGCGCCGG
CTGATCCGGC GCGCCACCCG CCTGAACCCG GAAGCGCGCG TGGTCGTCAC CGGCTGCTAC
GCCCAAATGA ACGCGGAGGA ACTGCTGAAG CTGGCCGGGG TCAACCTGAT CCTCGGCAAC
AGCGAGAAGA AGGACATCGT CGGTTTCCTG GAAGGGATGG ACGACCAGCC GCGGGCCGTG
GTGAGCGACA TCTCGCTGGA AAAGACCGGG GATACGGCGC CGCTGGAGAC CTTCGCCGAG
CACACCCGCG CCTTTCTGCA GGTGCAAAAC GGCTGCGACG CGCGCTGCGC CTACTGCATC
GTCCCCTACG CCAGGGGGGC CAGCAGGAGC GTGGCCGTCC AGGAGGCCCT AGACGGCATG
GCCGCCTTCG CCGCCCAGGG TTTCCAGGAG ATCGTCTTGA CCGGGATCCA CCTGGGCGCC
TACGGACTCG ACCTGGCCCC CGCCACAGAC CTCCTCGGCC TGATGCAGAA GGCCCAGGAA
CAAGGTGTGG TGCGGCGCCT GAGGATCGGA TCGGTAGAGC CGACCGAGGT GTCAAAGCAA
CTGATCGACT TCATGGCCCG CTCGCCCATG GTCTGCCCGC ACCTCCACCT GCCGCTGCAA
AGCGGCTCGG ACAGCGTCCT CTCCCGCATG AACCGCGGCT ACGACACCGC CCTTTTCCGC
GAGGTGGTGC AGTCGCTCGC GTCGGCGATG CCGGAGGTCT GCATCGGTTC CGACGTGATC
GCCGGGTTCC CCGGGGAAAG CGACCAGGAG TTCGACGAGA CCTACCGCTT CATCGACTCG
CTACCGCTCG CGTACCTGCA TGTGTTCCCC TTCTCGCAGC GCCCCGGCAC GCCGGCGGCG
ACCATGACGC CGCAGGTGCA TCCCAAGGTG ATCAAGGAGC GGGCCGAGGC GCTGAGGGTA
CTGTCGGAGC GGAAGAAATC GGATTATGCG GCGGGATTTG TGGGTCGCGA GCTTCGGGTC
CTGGTGCAAA AGGGGGAGAA GGGACTCTCC AGAAACTACC TGACCGTGCT GATCGAAGAA
AGCAAGGGGC TGGTGAACCG CGAGGTAACG GTACAGGTGA CCGGGGCCAA AGATGGGGAA
CTGGTTGGCC GGGTGCTTAA GGAAAGCTAG
|
|---|
| Protein sequence | MSKTIAITTL GCKINQFESA AMTQALEQNG YSMVPFSDKA DIYVINSCTV TAKTDAESRR
LIRRATRLNP EARVVVTGCY AQMNAEELLK LAGVNLILGN SEKKDIVGFL EGMDDQPRAV
VSDISLEKTG DTAPLETFAE HTRAFLQVQN GCDARCAYCI VPYARGASRS VAVQEALDGM
AAFAAQGFQE IVLTGIHLGA YGLDLAPATD LLGLMQKAQE QGVVRRLRIG SVEPTEVSKQ
LIDFMARSPM VCPHLHLPLQ SGSDSVLSRM NRGYDTALFR EVVQSLASAM PEVCIGSDVI
AGFPGESDQE FDETYRFIDS LPLAYLHVFP FSQRPGTPAA TMTPQVHPKV IKERAEALRV
LSERKKSDYA AGFVGRELRV LVQKGEKGLS RNYLTVLIEE SKGLVNREVT VQVTGAKDGE
LVGRVLKES
|
|---|
| |