| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_1057 |
|---|
| Symbol | |
|---|
| ID | 6781035 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | - |
|---|
| Start bp | 1229870 |
|---|
| End bp | 1231225 |
|---|
| Gene Length | 1356 bp |
|---|
| Protein Length | 451 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642767043 |
|---|
| Product | type II and III secretion system protein |
|---|
| Protein accession | YP_002137873 |
|---|
| Protein GI | 197117446 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGATGCA TCCCCTCAAA ACCGTGCCTG GCCTTCCTGC TTTTCTGCCT CGGCCTTCTC
GTCGAGGCGG CGACCGCAAC AGCCGGCGTC CCGACCACCG TGATCGTCAA CCGGGGGGTG
GTTCTCAACC TGAAGAACCC GGCCCGCTAC GTCAACATTA CCGACAAGGA CGTGATCGAC
GTCCCCGATC CCCTGCGCCG CAACCAGCTT CTCATCAACG GCAAGAAAAT CGGCTCCACC
AACCTGATCG TGTGGGAGGA GAACAACGAC AAGCCCACCT TTTTCGATGT CCGGGTGGTG
GGGGACCGGG AGGCGATCGA GTCCCAGATC AGGGACTACG CACCCAAAGA CGACATCAGC
GTCCAGTACG CCCAGGACAC GGTGATCCTC TCCGGCAAGG TCGCCAACGA GATGACCGGC
AAGAAGGCCG AGGAGATCGC CAAGGCGTAC TCCGCGAAGG TGTTGAACCA CATCACCGTC
GACGAGCCGC AACAGGTGCT GCTGCAGGTC AAGGTGGCGC AGGTGGACCG GACCTCGCTG
AAAAGGCTCG GCCTCAGCGC CATCGTGAAG GGTAGGACGG CCGAGGGGTT CACGAACCTG
GTGGGAGCCC CCAGCGGCAC CAGCCGCAAC ACCGAATCGA CGCCCACAAG GTTCACCTCC
ACCGAGGGGA ACGGGATCGT TGGGAACATC CCCGGCATTG GGGGGTTCGA CCCGCTGAAC
GCCTTCAACG TCGGGGTCTC CTACTTCCCA GCGGGGATCG GCGCCGTGCT CCAGGCCTTG
AGCAGCAAGG GGCTCGCGAA GATCCTCGCC GAGCCCAACC TGCTGGTGAA AAGCGGCGAA
GAGGGGAATT TCCTCGCCGG GAGCAGGATC CCCTACAGCG TGCTGATCTC GACCGGCGGG
GCGTCCACCT CGTCCATCGT CTTCGAGACG GTTGGGGTGA AGCTCAAGTT CAAGCCGCAG
GTGCTGCAAA ATGGCCTGAT CAACCTGAAG ATCGACCCGG CTGAGGTAAG CAGCATCGCC
GGGACCCTAG CGGTCAACGG CTACCCCATC ATCGACACCA GGGACGTCCG CACCGACGTG
GAACTGCGGG ACGGCGAGAG CCTGGTTCTG GCGGGCCTGC TCCAGGAAGA GCAGATCAAG
AACATGTCCA AGATCCCCCT TTTGGGGGAC ATACCGATCC TCGGTGCGCT GTTTCGCTCC
TCGCAGAAAG ACATCCGGGA AAAGGACCTG GTCTTTTTCA TCACGCCGAA GATAGTGAAG
CCCACTCCCG CAGGGGTCGC GACCAAGCTC CCCACCGACG CCGTTACTCC CGAGGAGGAG
AAGGGATACG ACTGGATCCC GCGGGGAGGA AAGTGA
|
|---|
| Protein sequence | MRCIPSKPCL AFLLFCLGLL VEAATATAGV PTTVIVNRGV VLNLKNPARY VNITDKDVID
VPDPLRRNQL LINGKKIGST NLIVWEENND KPTFFDVRVV GDREAIESQI RDYAPKDDIS
VQYAQDTVIL SGKVANEMTG KKAEEIAKAY SAKVLNHITV DEPQQVLLQV KVAQVDRTSL
KRLGLSAIVK GRTAEGFTNL VGAPSGTSRN TESTPTRFTS TEGNGIVGNI PGIGGFDPLN
AFNVGVSYFP AGIGAVLQAL SSKGLAKILA EPNLLVKSGE EGNFLAGSRI PYSVLISTGG
ASTSSIVFET VGVKLKFKPQ VLQNGLINLK IDPAEVSSIA GTLAVNGYPI IDTRDVRTDV
ELRDGESLVL AGLLQEEQIK NMSKIPLLGD IPILGALFRS SQKDIREKDL VFFITPKIVK
PTPAGVATKL PTDAVTPEEE KGYDWIPRGG K
|
|---|
| |