| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_0962 |
|---|
| Symbol | |
|---|
| ID | 6780930 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | + |
|---|
| Start bp | 1112919 |
|---|
| End bp | 1116449 |
|---|
| Gene Length | 3531 bp |
|---|
| Protein Length | 1176 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642766939 |
|---|
| Product | chromosome segregation protein SMC |
|---|
| Protein accession | YP_002137779 |
|---|
| Protein GI | 197117352 |
|---|
| COG category | [D] Cell cycle control, cell division, chromosome partitioning |
|---|
| COG ID | [COG1196] Chromosome segregation ATPases |
|---|
| TIGRFAM ID | [TIGR02168] chromosome segregation protein SMC, common bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.910781 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATCA AGAGACTGGA AATACACGGC TTCAAATCCT TTCAGGACAA GGCTGTCCTG
GACTTCAACC AGCCGATAAC CGGGGTAGTC GGCCCCAACG GCTGCGGCAA GTCCAACGTC
GTCGACGCCA TCCGTTGGGT CATGGGGGAG CAGTCCGCCA AGAACCTGCG CGGCAAGTCG
ATGGAGGACA TCATCTTCGG CGGCACCGAG TTCAGGAAAC CGCTCGGCAT GGCGGAGGTT
TCCCTGTTCT TTTCCACCGA GGACGGCCGC GTCCCCGCGA AATACCTCAA CTTTTCCGAG
ATCCAGGTCA CCCGTCGCCT CTACCGTGAC GGCGACAGCG ATTACCTGCT GAACAAGACC
CCCTGCCGGC TTTTGGACAT CGCCGAGCTC TTCATGGACA CCGGTATCGG CGCCAAGGCC
TACTCGATCA TCGAGCAGGG GAAGATCGGG ATGATCCTGC ACGCCAAGCC CGAGGAGCGC
CGCTTCCTGA TCGAAGAAGC CGCAGGTGTC ACCAAGTTCA AGGCGCGCAA GGTCGTCGCC
ATGAAGAAGA TGGAGGCGAC CCGCCAGAAC CTGCTGCGCT TAGGCGATAT CATCTCCGAG
ATCAAACGCC AGATGAACGG TCTGCAGCGC CAGGCGAAGA AGGCCGAGCG CTTCAGGGAG
ATACGGCTCG AATTGAAGGA GATCGAGCTG CTTTTCGCCG CCAAGGGGTA CGGCTCGGTG
CAGAAGGAGC GGCAGGGGCT GGAGCGCGAG ATCGCGGAAC TCGAGTCCAA GCTGGTCGAC
ATAACCGCCC GGCTCAACGA GGCAGAGCTT TCCATTGAAG GGAAGCGGAT AACCCTGCTG
GAGACCGAGC GCGCGCTGAC CGCCGCCCAG GAGGAGATCT TCCGCTGGAA GAGCGAGCTG
CAGGGTGGGG AGAACAAGCT TGAATTCCAG CGGCGGGAGC TTGCCAACCA GGAGCGCCAC
GGCGCGCGGT TCGAGGAGGA ACTCCAGGGG CTCAGGGACC AGCTGGCTGC CTCCGAGCGT
GAACTCGTCT CGCTTGAGAC CCAGCAGGCA TCGTTTCTTG AAGAGCACGC GCGCGAGAGC
GAGGCGCTAG AGCACCGGGA GGCGCTGCTG GAGGAAATGG CGGCGAGCGA GGCGGGTGTT
ACCCGTGAAC TCGACGAGGC GCGCCGCGCA ATGTTCGCGG CACTTTCCGA GGGGGCGCAG
GCGAACAACC AGCATGCCGC TGCCGTCAAA AGGCTCGCCT CCGTCGACGA GCGCCTGCAG
GCAAGTAAAC GGGAGCGCGT GCTCCTCGGG GAGCGCCTCT TCGAGTCGAA CGGGAAGGTG
GACGCGCTCA AGGCCGAGCG CGAACAGTTG GCCCGGGAAA AAGAACTGCT GGACGAGGAA
CTGACGCTTG CCGGAAGCCG CGAGGCGGAA CTCAAACAGG CGCAGGAGGC GGGGGACAAG
CTGCTGCAAC AGCTGCGCGA CCAGCTCTCC TCCGCGTCGT CGAGGCTCAA ATCGCTGCAG
GAACTGGAGG CCCAGTTCGC CGGGTACGGG CAGGGGGTGA AGAACCTGCT CCTGGCCGAC
TCGTTCAAGG GGGCATCCCT TACCATGCTG GCCGATGCCA TTGAGGTCGA GGAGGAGTTC
GAGGTGGCGC TCGAATCGGT GCTGGGTGAG CGTCTGCAGT ACCTTCTCTG CGGCTCGCCG
GACCTGGCTC TCGACGCGGT CCGGCACCTC AAGGGGAACT CCGGCGGGCG CTGCAGTTTC
ATCACCGCCC CACCCTGGCA TCACCCAGGT GCAACGCCTT CCGGCGCCGC GCCACTTTTG
GAGCGGGTCA CCGTCCCCGC AAAGCACGCG CAGCTGGTCG AGCCGCTGCT GTCGGGCGCT
TATCTCGCGC GTGACCTTGC GCACGCATTG GAACTTGCAG CCTCCTTCCC CCACGCTACC
TTCGTCACGG TCGACGGTGA CCTGGTCCAC GGCGGCGGCA TCCTGAACGG GGGCTCCGCC
GAACCCGCGC AGCAGGGGAT CATCCACAAA AAGCGCGAGA TCAAGGGGCT AGGAGCCGAC
GTGGAGCGCC TCACCGGCGA GGTGCAGCAG CTCGCGACGG CCCGAGAAAC CAGAAGGGTC
GAGATCGCCG AGGCCGAGGC GCACCGGGTC GAACTGCGCC AGTCGCTGCA TCGCCTGGAG
ATCAGGGTGC TAAACGCGGA AAAGGATCTC CAGTCCGCCC AGGCCGAGTG CCGCAGGCTC
GAGGAGAATG CCGCCGTCCG CGAAATGGAG GAGGAGCAGC TCTCCGAAGA GCAGGACCTG
GTCGCCAAAG AAATCTCCCA GGCGGAAAAC CGGCGGGGCG AAGCCGAAGA GCGCAAGCTG
GCCCTGGAGA AGAACGTCGA GGCGCTGCAG GGACGCCTGG AAGGATCTCG TTTCGAGATG
GAAGAGGCGC GCGAGATGGT CACCTCCCTC AAGGTGCGGG TCGCCGCGCT CAAGGAGAAG
GGGGAGTCGA CCCAGCGCGC TTACCAGCGC GTGGAGGCGC TTTGCGCCGA CCTTGCCAGC
CGGATCTCCT CCCGCGGCAA CGAGCTTGAG GGCTCGGGCG CCGAGCGCAC CCGCCTGATT
GACGCCATCG CAGCCGGCGA GGAGGCGCTG CGCGACATAG TGAAGCAGCA GCTTCGAAGC
GAGCAGGCGC TCCTCCTGGT GAAGGAGCGC TACGAGACCG AGGCGGCAAC AGTGCAGGAG
GAGGAGCTGC GCCTGAAGGG GACCCGCAGC GAGGCGTCGC TTTTGCGGGA CCAGCTAAAC
GCCAAGAGCA TGCGGCTCAC CGAGGTCAGC ATGCGGCTCT CCCACCTGGA GGAGACTCTA
CGCGAGAAGC ACCGCATGGA GATCGCGGAC GCCCTTTTGA ACTACTCCAA GGTGGAGTGG
GACGAGGAGG AGCGCGCCGT GCGCCAGGCC GAGCTGCAAA AGGCGATCAA CGAGATGGGC
GAGGTTAACC TGATGGCGAT CGAGGAGTTC AAGGAGATGG AGGAGCGCTT CTCCTTCCTT
TCCAGCCAAA AGGACGATCT GGAAGAGTCG ATGAACGCCC TGCAGAAGGC CATCCAGCGC
ATCAACCGCA CCACGCGCAA ACGCTTCCTC GAAACCTTCC AGATGGTGAA CGAGAAGTTC
CAAACCATCT TCCCGAGGCT CTTTTGCGGC GGCCACGCAG AGCTACGCCT GACCGACGAG
GAGGACCTGC TCAATACGGG GCTCGACATC GTGGTCCAGC CTCCGGGCAA GAAGCTGCAG
AACGTGTCGC TTCTCTCCGG CGGCGAAAAG GCGCTCACCG CCGTCGCGCT GATCTTCTCC
ATCTTCCTGA TCAAGCCCTC GCCCTTCTGT CTGCTGGACG AGGTAGATGC GCCGCTGGAC
GATGCCAACA TCGGCAGGTT CAACGACATG GTGCGCGAGA TGAGCGCCAA CTCGCAGTTC
ATCATCATCA CCCACAACCG CGCCACCATG GCAGTAGCCG ATACCCTCTA CGGGGTCACT
ATGGAGGAGC CGGGCGTCTC GAAGCTGGTA TCGGTACGGC TCAACCGTTA G
|
|---|
| Protein sequence | MKIKRLEIHG FKSFQDKAVL DFNQPITGVV GPNGCGKSNV VDAIRWVMGE QSAKNLRGKS
MEDIIFGGTE FRKPLGMAEV SLFFSTEDGR VPAKYLNFSE IQVTRRLYRD GDSDYLLNKT
PCRLLDIAEL FMDTGIGAKA YSIIEQGKIG MILHAKPEER RFLIEEAAGV TKFKARKVVA
MKKMEATRQN LLRLGDIISE IKRQMNGLQR QAKKAERFRE IRLELKEIEL LFAAKGYGSV
QKERQGLERE IAELESKLVD ITARLNEAEL SIEGKRITLL ETERALTAAQ EEIFRWKSEL
QGGENKLEFQ RRELANQERH GARFEEELQG LRDQLAASER ELVSLETQQA SFLEEHARES
EALEHREALL EEMAASEAGV TRELDEARRA MFAALSEGAQ ANNQHAAAVK RLASVDERLQ
ASKRERVLLG ERLFESNGKV DALKAEREQL AREKELLDEE LTLAGSREAE LKQAQEAGDK
LLQQLRDQLS SASSRLKSLQ ELEAQFAGYG QGVKNLLLAD SFKGASLTML ADAIEVEEEF
EVALESVLGE RLQYLLCGSP DLALDAVRHL KGNSGGRCSF ITAPPWHHPG ATPSGAAPLL
ERVTVPAKHA QLVEPLLSGA YLARDLAHAL ELAASFPHAT FVTVDGDLVH GGGILNGGSA
EPAQQGIIHK KREIKGLGAD VERLTGEVQQ LATARETRRV EIAEAEAHRV ELRQSLHRLE
IRVLNAEKDL QSAQAECRRL EENAAVREME EEQLSEEQDL VAKEISQAEN RRGEAEERKL
ALEKNVEALQ GRLEGSRFEM EEAREMVTSL KVRVAALKEK GESTQRAYQR VEALCADLAS
RISSRGNELE GSGAERTRLI DAIAAGEEAL RDIVKQQLRS EQALLLVKER YETEAATVQE
EELRLKGTRS EASLLRDQLN AKSMRLTEVS MRLSHLEETL REKHRMEIAD ALLNYSKVEW
DEEERAVRQA ELQKAINEMG EVNLMAIEEF KEMEERFSFL SSQKDDLEES MNALQKAIQR
INRTTRKRFL ETFQMVNEKF QTIFPRLFCG GHAELRLTDE EDLLNTGLDI VVQPPGKKLQ
NVSLLSGGEK ALTAVALIFS IFLIKPSPFC LLDEVDAPLD DANIGRFNDM VREMSANSQF
IIITHNRATM AVADTLYGVT MEEPGVSKLV SVRLNR
|
|---|
| |