| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_0231 |
|---|
| Symbol | |
|---|
| ID | 6783056 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | + |
|---|
| Start bp | 274997 |
|---|
| End bp | 276343 |
|---|
| Gene Length | 1347 bp |
|---|
| Protein Length | 448 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642766199 |
|---|
| Product | UbiD family decarboxylase |
|---|
| Protein accession | YP_002137058 |
|---|
| Protein GI | 197116631 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0043] 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases |
|---|
| TIGRFAM ID | [TIGR00148] UbiD family decarboxylases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCATTTA AGGACTTGCG AGGTTTCATC GCCGGACTGG AAGCTGCCGG GGAACTCCAG
AGGGTGGCTG CGGAGGTCGA TCCCGACCTG GAAATCGCCT GTATCACCGA CCGCCAGAGC
AAGCTCCCCG GCGGCGGTAA GGCGCTTCTC TTCGAGAACG TGAAAGGGAG TCCCTTTCCG
GTTGCCACCA ATCTCTTCGG TTCGCCGGCT CGCATGGCAC TCGCACTGGG CGTTCCAAAG
CTGGACCGGC TCTCGGAGGC GATGGACGAA CTGCTCCTTT GCCCGGGGCG GGCACCCCTC
CCGCTGCTGT CCGATCGAGC CCCCTGCCGG GAGGTCGTGG AGCGGGCCCC GAATCTGCTG
CGCTACCCCT TCCTGAAGAG CTGGCCCGGC GACGGCGGGC GCTTCATCAC GCTCCCGCTG
GTGTTCACCA GGGACCCGGA GACCGGCGCT GACAACTGCG GCATGTACCG GGTCCGGATC
TTCGGTGAGC GAAGTGCCGG GGTGCGATGG AAAAACGGCA GCGGCGGCTG GCAGCATCAC
CGGAAGTACC TCGCATCCGG AGAGCGGATG CCGGTCGCGA TCGCCATAGG CGCCGACCCG
GCGCTGACGC TCGCCGCATC GCTCCCGCTC CCCGCCGGCC TGGACGAGGT TTCCTTTGCC
GGGTACCTGC GCGGCGAGCC GGTGCCGATG CTCCGCTGCC TCGATTCGGA CCTCTTGGTT
CCTGCGGATG CCGAACTGGT AATCGAGGGG TTTGTCGAGC CGGGGGTGAC CCGCAACGAA
GGAGCTTTCG GCAACCACAC CGGGAGCTAC GACCCGGGCG AAGAGGTGCC GCTGCTGACG
CTCACCTGCA TCGCGCGCAG GCGCGACCCC ATCTGCCAGG CGACGGTGGT GGGCCCTCCT
CCCATGGAGG ACTGTTGGAT GGCCAAGGCT GCCGAAAGGC TGCTGCTGCC GCTTATCCGC
AGGCAGTGCC CGGAGATCGT CGACCTGCTG CTGCCGCTGG AGGGAATCTT CCACGGCTGC
GCCTTGATTG CAATAGAGAA GAGCCTTCCC GGGCAGGGGC GGCGCGTGCT GGAGACGCTG
CGCTCGGAGG GATGGTTGAA GCGGGGAAAA CTTTTGGTGG TGGTCGACGC CGCCGAAATG
CCCCTCACGC TGTCGGAAGG TTTCTGGCGC GCGCTGAATG CGGTCAATTT TCCGCGCGAT
CTGGCGGTCA CCCCCGACGG GTGCCTCGGG GTCGACGCGA CGAGAAAGTT CCCGGAAGAG
GGGGGCGGGC AGTACAAGGA GTTGAAACAG GATGCATCGG TTAGTGCCCA GGTGCAGAAG
AGATGGCGGG AGTACGGCTT TTTCTAG
|
|---|
| Protein sequence | MAFKDLRGFI AGLEAAGELQ RVAAEVDPDL EIACITDRQS KLPGGGKALL FENVKGSPFP
VATNLFGSPA RMALALGVPK LDRLSEAMDE LLLCPGRAPL PLLSDRAPCR EVVERAPNLL
RYPFLKSWPG DGGRFITLPL VFTRDPETGA DNCGMYRVRI FGERSAGVRW KNGSGGWQHH
RKYLASGERM PVAIAIGADP ALTLAASLPL PAGLDEVSFA GYLRGEPVPM LRCLDSDLLV
PADAELVIEG FVEPGVTRNE GAFGNHTGSY DPGEEVPLLT LTCIARRRDP ICQATVVGPP
PMEDCWMAKA AERLLLPLIR RQCPEIVDLL LPLEGIFHGC ALIAIEKSLP GQGRRVLETL
RSEGWLKRGK LLVVVDAAEM PLTLSEGFWR ALNAVNFPRD LAVTPDGCLG VDATRKFPEE
GGGQYKELKQ DASVSAQVQK RWREYGFF
|
|---|
| |