Gene MADE_03960 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_03960 
Symbol 
ID6777714 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand+ 
Start bp4269113 
End bp4269739 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content48% 
IMG OID642757411 
Productputative general secretion pathway protein H precursor 
Protein accessionYP_002128244 
Protein GI196158755 
COG category 
COG ID 
TIGRFAM ID[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAAAGCA GCGGCAGTAC CTACAAACAC AATATAGGCT TCACCCTTTT AGAAGTCATG 
TTAGTACTGC TACTAATGGG TCTAGCCGCT GGCTACGTCA TGTTTAACGC TTTTGGGGCG 
AGTAAGTCTG ACTTACTTAA ATCACAAGCC CAGCGCCTGC AGGTCATTGT TGACATGGCC 
AGCGACTTCG CAGTGTTAAA TCAGCAGCAG CTTGGTGTAC GCTTTGAAGC GGACAAAAAT 
GAGTATTATT TTGTTTATTT AGACGACGAT GACCAGTGGC AACGCATAGA AGGTGAAAAG 
ACCTATGAGC CCTACACCTT GCCCGAGCCC TTCACCTTCA CCTTAAACCT TGATGACTTG 
CCGTGGGACG TTGAAGACCG ACTGTTTGAC CGTGAGTTGT TTGACGAGAA CTTAAGCGTG 
TCTGACGAAG GCGTTGAGAT AGGCAACGAA GAAGAAAAGA AGCTTCCTCC CCCACAAATT 
CTCATTATGT CGAGCGGCGA AATTACCCCT TTTACGCTGT CGTTTAACTA TGAAGGTGAT 
GATGGCGACG ACCCCGTCTA TTATAGCCTT CAAAACCAAG ATCTACCGCC TTTAGTGCTT 
GAAGGGCCGC TGGAGCGTCC GTTATGA
 
Protein sequence
MQSSGSTYKH NIGFTLLEVM LVLLLMGLAA GYVMFNAFGA SKSDLLKSQA QRLQVIVDMA 
SDFAVLNQQQ LGVRFEADKN EYYFVYLDDD DQWQRIEGEK TYEPYTLPEP FTFTLNLDDL 
PWDVEDRLFD RELFDENLSV SDEGVEIGNE EEKKLPPPQI LIMSSGEITP FTLSFNYEGD 
DGDDPVYYSL QNQDLPPLVL EGPLERPL