Gene MADE_03866 details

Gene Information

• Locus tag: MADE_03866
• ID: 6776937
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Alteromonas macleodii 'Deep ecotype'
• Kingdom: Bacteria
• Replicon accession: NC_011138
• Strand: -
• Start bp: 4164293
• End bp: 4166095
• Gene Length: 1803 bp
• Protein Length: 600 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 642757317
• Product: thiamine pyrophosphate-binding domain protein
• Protein accession: YP_002128150
• Protein GI: 196158661
• COG category: [G] Carbohydrate transport and metabolism; [H] Coenzyme transport and metabolism; [R] General function prediction only
• COG ID: [COG3961] Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTGGGTG CGAATATGCG TGCGCACTGC GCGCAAAATC TGGGTACAGA ATATGCTAAT 
AGTCTTCCTC TACTTGGTGA CGTCATGGCT GACATCCTGA CGCTGTTTGG ATGTAAGACA 
GTGTTCGGGG TAGGAGGTGA CTTTGCAGAT AATATTATCA GCGCTTTTGA AGGAAAACTT 
GAAACTACGC CTTCTAGTAA CGAAATGCAC GCCGGCTATG CTGCTTGTGC GCAAGCTCAA 
ATTTCGGGAT TAGGTGCAAC GCTGACAACA TTCACCGTGG GTAGTTTACC TTGTTCCAGT 
CCAGCAGCCC TTGCAGTGGC GGAGAAGCTG CCAGTGGTAT TTATTTCCGG AGCACCCGGT 
GAGCAAGAAA TTTCTGACAC GCTGCTGCAT CATAGTGTGG CCTCCAGCTC TGAATGGATG 
TTGAAATATG ATTGTGCCTT GGAGTCATTT CGTGCATTAG GTATGAGAGC CGAAAGATTG 
CAAGGCGCAA GATCGAAAGG TCAGCCGAAT ATGGCGGCTG AACGTTTTTT TCAATTGGTT 
GCTCACGCCT ATGCCAATAA ACAGCCTGTT TTCATTGAGA TACCCCGTGA TTTAGTCTTT 
GAACCCACCC AGGCATTAAA GCTGCCACAA ACACCTGGCG ACGTAAATCA TGAGACCTAT 
GTGTTAGATG GTGCGCAGCA TATCGCTGAA CACATTGTTG AAAAATTGAA TCAATCAAGC 
CATCCACTTC TGTTCGTTGG CGAGAATGTC AAGTTGAACA CAAGATTATG TGAGCAACTG 
CGCAATTTTG TGGACAAATT CAATATTCCT TATGCAACTA GCTGGCTGGC AAAAGGTGTT 
TTAGATGAGT CTGATCCGCT GTCCGTAGGA AGCTATAACG GCGTCTTTAG TCCTGACCAC 
GTGCGATACT ACATTGAACA GAAAGTTGAT TACATCTTGG AAGTCGATAC CAGTATCCAG 
AGTCAAGATA CGAATAATGC TTTTTGTTCA GGCACGCATG TTATTCAATC ATTTGAAAAT 
AAAACCATGG TAAAAGGGAC CGTTCAAAAT CAACAAGGTT TGCTACATGT CTTTGAACAA 
TTACTGGTGA GCGATATCCC TGTTTTTCAA ACTTTGCTGG AAGAAAAGCG TCGTCCGGTT 
TTAGACGATA ATGACAGCGT CGACTTCCAT AATCTTGCAG ATGCCCTCAA TGATGTGCAA 
AGTCAGCTAT CTGCTTCGTT AATTTATCTG CCAGAAATTG GTAATTCGTA TTTTGCTTCT 
TACAGTTTAG AGACTAAGCG GTCAAGTCAT TGTCGGCCTT GGCTAACTAA TCCCTGGTAT 
GGTGCTATGG GTAGTAGTCT GCCCTATGCA CGTGCTGTGG CTAAGACCTT GAAATCTTCT 
AACTCGTCCG ATATTGCGGT TGTTATTACC GGTGATGGTG GCTTTCATTT TCAATTAAAT 
GAGTTAATTC ATTTTCAACG AGAGCATCTT GCGGTTGTTA TCCTTTATAT GCGAAACAAC 
ATCTTCCACC TTGGCAAAAG TGGCGAAAGC ACAATGTACC ATTGTTCAAC CCCTAGATTT 
GATGTGCTCA CACTGGTTAA AGCTTATGGC GGCAAAGGGT TGCAGTGCAA AACAATAGGA 
GAATTGAGGA CTCACTTACA AAGCGCGGTT GAATCAAATT GTGGGATAAG ACTATTGGAA 
ATACCGGTAG ACCCCAATCC AGACAAACTC AGTCGAGAGA TAAGTATGCT GAACTTATTC 
ATACAAATGA AAAATGGCAA GCAAGGTGCA AAAGAAGCCT GGGATCTAGC TGTTGCTGGA 
TAG 

 

Protein sequence

MVGANMRAHC AQNLGTEYAN SLPLLGDVMA DILTLFGCKT VFGVGGDFAD NIISAFEGKL 
ETTPSSNEMH AGYAACAQAQ ISGLGATLTT FTVGSLPCSS PAALAVAEKL PVVFISGAPG 
EQEISDTLLH HSVASSSEWM LKYDCALESF RALGMRAERL QGARSKGQPN MAAERFFQLV 
AHAYANKQPV FIEIPRDLVF EPTQALKLPQ TPGDVNHETY VLDGAQHIAE HIVEKLNQSS 
HPLLFVGENV KLNTRLCEQL RNFVDKFNIP YATSWLAKGV LDESDPLSVG SYNGVFSPDH 
VRYYIEQKVD YILEVDTSIQ SQDTNNAFCS GTHVIQSFEN KTMVKGTVQN QQGLLHVFEQ 
LLVSDIPVFQ TLLEEKRRPV LDDNDSVDFH NLADALNDVQ SQLSASLIYL PEIGNSYFAS 
YSLETKRSSH CRPWLTNPWY GAMGSSLPYA RAVAKTLKSS NSSDIAVVIT GDGGFHFQLN 
ELIHFQREHL AVVILYMRNN IFHLGKSGES TMYHCSTPRF DVLTLVKAYG GKGLQCKTIG 
ELRTHLQSAV ESNCGIRLLE IPVDPNPDKL SREISMLNLF IQMKNGKQGA KEAWDLAVAG