| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_03282 |
|---|
| Symbol | |
|---|
| ID | 6778537 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 3541752 |
|---|
| End bp | 3543890 |
|---|
| Gene Length | 2139 bp |
|---|
| Protein Length | 712 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 642756730 |
|---|
| Product | hypothetical FOG: GGDEF domain protein |
|---|
| Protein accession | YP_002127568 |
|---|
| Protein GI | 196158079 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCCGTG AAGGATTTAG CACATTGCGC GTGCTCATGT GTGCCCTACT CGTTGCTGTG
CACTTTGCTC ATGTTAACCC GGTAAAAGCG TTAACGATTT TTGATAAGGA GTTCGCCGAC
GTTGAATCGC TGTTACACGC AAAACAATAT GCCAACGCAG ACACCAAGGC ACTTCTCCTT
CTAGAGCAAG CCCTTCAGCA GCAGCACATG CCTGCAGATA TGTTCTCAAG CCTAGGTGAA
CTGCTTCAAA ATGCTTCGCG CTTTGAAGTA TCCAAAGCGA TATTCAACGC AGCATTAGAG
CGATACACCA CAGAAGGTGA GCTGGAAAAG ATGGCGTCAA CGCTGTTGCA GCTTGCGACT
TCGGAACGAC ACCTTTCAAA CTACGACACC GCCCTTACCT ATGTACGTCG CGCTATGTCT
ATCGCGCACA TTGAGCGCAA CGACCTACTA AAAGCCAAAC TGAATTTAGA GCTTGGCATT
ATCCGCCAGC AACAAAACCA GATTGAAGTC GCCCTTGAAC CTTTAAAGCA AGCACTCGAT
TTCTTCAGAG AAAATCGCAT GTCCAATGAA ATGAGTCTTT CGCTACTGCG CATTGGTGAT
ATCTACAGCC TTCTTAACCA AACCTCTCTT GCGCATACCT ATTACCAGGA TGCTTTCGAC
AGTATCGAAG GGTCTACTGA CCCGCGTCTT CTTGGCACTA TTAAAACCCG TATCGGCGCC
CTTTTACTTA AAACTGGCGC CAGTGCGCAA GCAACAGTTG CCATCAAAGA GGGGCTTGAG
CTTCTACAGG TGACAAACGA TGTGGGCGCT ATCGCTGAAG CGAAAATGCT GATGGGCCGC
GCCCTAGTAG AAAACGGTGA GACGGCTAAA GGACGCGAGC TGTTAATGGA AGCCATGCGC
TTTGCAAGCT CTTCAGGGCA AGCCAAACTC ATGATTGATG GTCGCTTGGC GCTGGCTCAG
GCTTACATGA AAGAACAGGA TTTTGAGCGT GCGTTAGCAG AAGCCAGGTC TGGGACTATC
GACGCAAGGA AAAGCCGGGA TTTACGCGGC CAGCTCAGCT TTTTATCGTT GCAACTTAGT
GCTTTCGTAT CCTTAGGCGA GTTTAAAAAA GCCCTAGATA TTCAATCTGT AATCCAGCAG
TTACGTGAAG TCTTACTCGA TTCTGAAAAT AAGTCGGCTA TCGAAGGGCT TCAGGCTGAA
ATAGAGCTTA TCAGGCAATC GCGTACGCTA GAAAAGCTAG AGGAGTCAAA ACAGCTAGCA
CTTGCCCAAG CAGAAAGGGA GAAGTTGCAA ACCACACTTG TCTGGAGCGT GTCGCTAGCG
GTAATGCTGT TGACCTTTTT AGTGTGGAGT AGATACAAGC AGCGACGACA AACCATCATT
TTACGCCGCG AAGTTCGTCA ACAAACCCTT GATCTTCACA AAAAGAATGA GGAGCTCCAA
GCCGCCTACA AAACCCTTGA AGAAGTTAGC TTGCGAGACC CATTAACCGG TTTGTACAAC
AGACACTGCC TCGAGTCTCA GCTACCTGGA GAAATTAGGC GCAGTCAATT TTCTGCACGC
CAAAGCCCTA CTACCGATAA GGCAAAGCAA GATTTACTTT GCCTCCTTAT AGACATTGAT
CATTTTAAAC GTGTTAACGA CGATTATGGC CATATTGCTG GTGATAAAGT TCTGTCGTCT
TTTGCTCAGG TTTTAAAAAA TGTGTTTAGA CAAACCGATC TCATTATCCG TTGGGGCGGA
GAAGAGTTTT TAGTGGTATG CAGACAGTCT AATCGAGAAG AGCTTCCCGA ACTCGCCGAG
CGTTGCCGGG AAATGGTGGC AAGTACGCCG TTTGATATCG GCTTAGACAA GCCCATAAAA
ATTACCTGCA GCATAGGGTT CTCGCTACTT TCTCCTGATA AGAAAGACAA CTCCGATGTG
GCATGGGAAC GCACGTTCGC CGTTATTGAC TACGCGCTGT ATGCATCAAA ACTCTCAGGA
AGAAACGGTT GGGTAGGTGT TATTGAGACC CTTGATACAG ACTTTAAGAA CCGCACGCCA
ATAGATGAAA AATTTAATTT TACTGGCTCC AGAATTGCGA CATCATTTAA CAACATCGCA
AGCATTCAGT GGCCTGATAC CCTCGATAAT AAGCAGTAG
|
|---|
| Protein sequence | MGREGFSTLR VLMCALLVAV HFAHVNPVKA LTIFDKEFAD VESLLHAKQY ANADTKALLL
LEQALQQQHM PADMFSSLGE LLQNASRFEV SKAIFNAALE RYTTEGELEK MASTLLQLAT
SERHLSNYDT ALTYVRRAMS IAHIERNDLL KAKLNLELGI IRQQQNQIEV ALEPLKQALD
FFRENRMSNE MSLSLLRIGD IYSLLNQTSL AHTYYQDAFD SIEGSTDPRL LGTIKTRIGA
LLLKTGASAQ ATVAIKEGLE LLQVTNDVGA IAEAKMLMGR ALVENGETAK GRELLMEAMR
FASSSGQAKL MIDGRLALAQ AYMKEQDFER ALAEARSGTI DARKSRDLRG QLSFLSLQLS
AFVSLGEFKK ALDIQSVIQQ LREVLLDSEN KSAIEGLQAE IELIRQSRTL EKLEESKQLA
LAQAEREKLQ TTLVWSVSLA VMLLTFLVWS RYKQRRQTII LRREVRQQTL DLHKKNEELQ
AAYKTLEEVS LRDPLTGLYN RHCLESQLPG EIRRSQFSAR QSPTTDKAKQ DLLCLLIDID
HFKRVNDDYG HIAGDKVLSS FAQVLKNVFR QTDLIIRWGG EEFLVVCRQS NREELPELAE
RCREMVASTP FDIGLDKPIK ITCSIGFSLL SPDKKDNSDV AWERTFAVID YALYASKLSG
RNGWVGVIET LDTDFKNRTP IDEKFNFTGS RIATSFNNIA SIQWPDTLDN KQ
|
|---|
| |