| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_03232 |
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| Symbol | |
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| ID | 6778354 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | + |
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| Start bp | 3490400 |
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| End bp | 3491608 |
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| Gene Length | 1209 bp |
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| Protein Length | 402 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 642756682 |
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| Product | type IV pilus biogenesis protein PilC |
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| Protein accession | YP_002127520 |
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| Protein GI | 196158031 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.169969 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAAAG CAACGGCAAC GTTTACTTGG CAAGGAAAAG ACAGGAATGG TCAATCTCGC
AAAGGTGAAA TTTCGGCCAC CTCGCTTTCT GAAGCCAAAA ACCTTTTGCG TCGCCAAGGG
ATTTCTGCGA ATAAGGTAAA AAAACTAGCT CAACCACTTT TTGGCAGAAC TCAAAAAATA
AAACCTGCCG ATATATCTGT CATATCACGA CAAATTGCCA CCATGCTAGC CGCAGGTGTT
ACGCTGATTC AATCTCTAGA AATGATAGCA CAAGGCCATG CAAACCCTGC AGTGCGAAAA
CTGCTTGGCG AAATTACGGA TGAAGTCAAA TCCGGTAATC CACTTTCTTC TGCGCTTCGA
AAACACCCGC TTTATTTTGA CGATTTATAC TGTGATTTGG TTTACACGGG CGAACAGTCA
GGTGCCCTTG AAACCATTTA CGATCGTATT GCCACCTATA AAGAAAAAGC CGAAGCACTA
AAATCAAAGA TCAAAAAAGC GATGTTTTAC CCTATCGCGG TTTTGGTCGT TGCTTTTATT
GTTACGACTA TTCTTCTTGT TTTCGTTGTG CCTCAGTTTG AAGAAATCTT TAGCAGCTTT
GGCGCTGAAC TCCCTGCGTT TACCCAGTTC GTACTGGCTA TATCGCGGTT TGTACAGGAT
TACGGTATTT TTATCGCCAT GGGCGTGGCA GCCGCAGGCT TTATGTTTGT GCGCGCGCAC
AGGCGCAGTC AAAAGCTTCG CGATACGGTA GACCGGAATA TTTTAAAAAT TCCTGTTATC
GGCGAGATAC TTAAAAAAGC CAGTATCGCA CGCTTTACCC GAACCCTTGC CACCACCTTT
GCGGCAGGTG TACCGCTAAT AGGCGCGTTA GAGTCAGCTG CAGGGGCCTC GGGAAATGCA
GTATACCGCG ACGCTATTTT ATATATTCGC AAAGAAGTGG CCGGTGGTAT GCCTATGCAT
GTAGCCATGC GCGCTACCCA AGTATTTCCA GACATGGTGA CGCAAATGAT AGCCATAGGT
GAAGAGTCTG GCTCTGTCGA TGAGATGCTA AGTAAAATTG CCACCATTTA CGAAGCAGAA
GTTGATGACA TGGTAGACGG CTTAACCAGC TTGCTTGAGC CTATGATCAT GGCCGTACTT
GGCGTGGTTA TTGGCGGCTT GATTGTGGCC ATGTACCTGC CTATATTCCA GATGGGTAAC
GTGGTATAA
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| Protein sequence | MAKATATFTW QGKDRNGQSR KGEISATSLS EAKNLLRRQG ISANKVKKLA QPLFGRTQKI
KPADISVISR QIATMLAAGV TLIQSLEMIA QGHANPAVRK LLGEITDEVK SGNPLSSALR
KHPLYFDDLY CDLVYTGEQS GALETIYDRI ATYKEKAEAL KSKIKKAMFY PIAVLVVAFI
VTTILLVFVV PQFEEIFSSF GAELPAFTQF VLAISRFVQD YGIFIAMGVA AAGFMFVRAH
RRSQKLRDTV DRNILKIPVI GEILKKASIA RFTRTLATTF AAGVPLIGAL ESAAGASGNA
VYRDAILYIR KEVAGGMPMH VAMRATQVFP DMVTQMIAIG EESGSVDEML SKIATIYEAE
VDDMVDGLTS LLEPMIMAVL GVVIGGLIVA MYLPIFQMGN VV
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