Gene MADE_03114 details

Gene Information

• Locus tag: MADE_03114
• ID: 6777810
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Alteromonas macleodii 'Deep ecotype'
• Kingdom: Bacteria
• Replicon accession: NC_011138
• Strand: +
• Start bp: 3365221
• End bp: 3365799
• Gene Length: 579 bp
• Protein Length: 192 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 642756564
• Product: Outer membrane protein, porin family
• Protein accession: YP_002127402
• Protein GI: 196157913
• TIGRFAM ID: [TIGR03304] outer membrane insertion C-terminal signal

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAACGTA CCATTATCGC CGGTATTTTT GGCGCACTTT CTTTAAATGC ATTCGCAGCT 
TCGCCTTCTT ATGACTTCGT TAAAGCTGGT TATGTACAAG CAGATATTGA AGACGCTGGT 
GATTTCGAGC CAACGGGCTT TCAAATTCAA GGCTTTAAAG CACTAAATGA AAATGTGTAC 
CTAACGGGTC GTTACGGTCA GTTAAGTGAA GATGTATCTG GTGGTGATAT CGATTTAGAC 
TATGTGTCTG CGGGTATCGG CTACCGCTAC GGCCTAACCG CTAATACAGA CTTTTTTGGT 
GAAGTCACTT ACGAATATGT AGATGTTGAT CTCGATTCTA GCGTCATTTC TGGTGACGCG 
GACGACAACG GCTATGGCAT CACTGCCGGT GTTCGCTCAA TGCTGTCTGA GCAGTTTGAG 
CTTCGCGGTG CTATTCGCTA TATCGACATT GAAGAAGATG AAACTGCCTT TGAAATTGGC 
GCAGACTACT TCTTTACGCC GCAGTTTTCA TTCGGTGCGA CCTATGTGAT CGCTGATGAT 
GTTGACCTAC TAGGTGTGTC GGCGCGCTAC ACGTTCTAA 

 

Protein sequence

MKRTIIAGIF GALSLNAFAA SPSYDFVKAG YVQADIEDAG DFEPTGFQIQ GFKALNENVY 
LTGRYGQLSE DVSGGDIDLD YVSAGIGYRY GLTANTDFFG EVTYEYVDVD LDSSVISGDA 
DDNGYGITAG VRSMLSEQFE LRGAIRYIDI EEDETAFEIG ADYFFTPQFS FGATYVIADD 
VDLLGVSARY TF